BS27389.complete Sequence
1817 bp assembled on 2011-10-14
GenBank Submission: KX805498
> BS27389.complete
GAAGTTATCAGTCGACATGAGGCTGTTCGCAGTGATTTTTTGGATAGGCT
GGGCCTTTGGCCTAGCGAATTCCAAGAACCCGAGTGCCGAGACGGGCAGA
CTGATAGCATCTCTACAAGCTGCTCCGGCTCCGGCGCCAGCACAAAGTGT
GATCTACAAGCTGCCACCACAGCACTACTATCCGCCACCACCGCCGCCGC
CTCCGCCTCCGCCACAGCACTGCAATTGCCCGCCAGGTCCACCGGGGCCT
CCTGGACCGCCGGGCTTACCAGGAACGCCTGGTCCGCAAGGTCCCAAGGG
ACACACTGGGTCCAAGGGCGAGCGAGGAGAGAAGGGAGAACGCGGTCACT
ACGGACTACCAGGCCAACCAGGTGAACCGGGACCTATTGGTCCACCGGGA
CTACCAGGCCCACCCGGTCACAAGTCGGGACATGGTCACCATGATCATCA
TGATCACCACCATCATCATCCAGCGCCACCGCCACCACCTCCACCTCCGC
CTCCGCCGCCTCCACCACCACCACCACCACACTCACACCCGCATTCACAT
CATCCCCACCCGCCGATCGTGACGCCACCAATTATAGTTCCCATACCATT
GCCACCGCAGAAAGGTGAACATGGTCACCATCATCACCACAAGGGATCCA
AAGGTCCACCCGGACCTCCAGGCCCACCAGGAACGGGACCACCGGGTCCT
CCAGGACCTCCAGGCACTACGTATCCACAACCCCCACCACCACCACCACC
ACCGCCACCTCCACCACCATCGTACCCATACCCACCGTACCCGTATCCAC
CACCTGGTCCTTATCCGGGACCATGGATTCCTCTGCCAGTGCCAGTGCCC
TGGCCCTCAAAGGGACATAAGGGGGATAAAGGTCACAAAGGAGGTCATAA
GGGAGACAAGGGCGGACACCACCATCACTATTATCCACCAGGACACGATA
AGGGAGGCTACTATCCGTATCCACCCCACGGTGGCCATGGAGGCCATCAC
CATCCAGGCCACAATTATCCAGGCCCCTATCCGCCACCATATCCACCTCA
CCATCCACATGATGGCGGAGACAAGGGTTATCACCATTATCCACCCCACA
ATCACGGAGGGCACAATCACGGGGGACACAACAACCATCATCCACCTCAC
AATGGAGAGCACAACCATAATCATCCCCCTCACAATCACGGAGGACATGG
CCACCATCATCCCTCACACAATCACGGAGGGCAGGACCCACATAATACAC
ACCCCCACACTGGTACACACGGAAATGGAGGACACAGCCAAACTTCACAC
CACCAGCACCCCCATCATCATCAACCAAAACCCACTAAGCCAGAGGGTAG
TGGCGAGCAAACTCCACGGGATGATCTGGACTTGCTAGATGAAAATGTGG
AGATTGTCGAAAACATAATTGATGAAAATGATAACGAAAATAATTTCATG
GAGGGCGAGGAGGAAATGTCCAATGAGCCCAATGACTTGGAGACGGAACC
CGAGGATGCGGACTACGGCCTTGAATATGCAGATAACACAGTGGAGAATC
CCGAATCTCCGAGTGGCGCTGAAGAAATCGATGATGAGGATTCAAGCTAT
ATGGTACCAGAAGGAGATGATGCGATGGAAGAGGACCATATGATGGAGGA
CCAGATGGACCCAGTGAATATGATGGAGGATAACGCACCTATGGATGGAG
ATGCAATTGAGGAGCGAACCAACAAAGGTCCGATTATCCTGTCAATTGGA
ACTCCTCGAAATCCCTTTCACATTTACGCCTATGAACAGTATAATATATA
AAAGCTTTCTAGACCAT
BS27389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5225-RA | 1785 | CG5225-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5225-RA | 1835 | CG5225-RA | 9..1799 | 12..1802 | 8940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17029541..17030665 | 678..1802 | 5625 | 100 | Plus |
| 3R | 32079331 | 3R | 17028797..17029432 | 46..681 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:51 has no hits.
BS27389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:19 Download gff for
BS27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 1..1783 | 17..1799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:34 Download gff for
BS27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 14..1796 | 17..1799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:44 Download gff for
BS27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 14..1796 | 17..1799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:44 Download gff for
BS27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17028706..17028736 | 17..47 | 100 | -> | Plus |
| 3R | 17028799..17029431 | 48..680 | 100 | -> | Plus |
| 3R | 17029544..17030662 | 681..1799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:34 Download gff for
BS27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12854428..12854458 | 17..47 | 100 | -> | Plus |
| arm_3R | 12854521..12855153 | 48..680 | 100 | -> | Plus |
| arm_3R | 12855266..12856384 | 681..1799 | 100 | | Plus |
BS27389.pep Sequence
Translation from 16 to 1800
> BS27389.pep
MRLFAVIFWIGWAFGLANSKNPSAETGRLIASLQAAPAPAPAQSVIYKLP
PQHYYPPPPPPPPPPPQHCNCPPGPPGPPGPPGLPGTPGPQGPKGHTGSK
GERGEKGERGHYGLPGQPGEPGPIGPPGLPGPPGHKSGHGHHDHHDHHHH
HPAPPPPPPPPPPPPPPPPPPHSHPHSHHPHPPIVTPPIIVPIPLPPQKG
EHGHHHHHKGSKGPPGPPGPPGTGPPGPPGPPGTTYPQPPPPPPPPPPPP
PSYPYPPYPYPPPGPYPGPWIPLPVPVPWPSKGHKGDKGHKGGHKGDKGG
HHHHYYPPGHDKGGYYPYPPHGGHGGHHHPGHNYPGPYPPPYPPHHPHDG
GDKGYHHYPPHNHGGHNHGGHNNHHPPHNGEHNHNHPPHNHGGHGHHHPS
HNHGGQDPHNTHPHTGTHGNGGHSQTSHHQHPHHHQPKPTKPEGSGEQTP
RDDLDLLDENVEIVENIIDENDNENNFMEGEEEMSNEPNDLETEPEDADY
GLEYADNTVENPESPSGAEEIDDEDSSYMVPEGDDAMEEDHMMEDQMDPV
NMMEDNAPMDGDAIEERTNKGPIILSIGTPRNPFHIYAYEQYNI*
BS27389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5225-PA | 594 | CG5225-PA | 1..594 | 1..594 | 3640 | 100 | Plus |
| CG14089-PA | 224 | CG14089-PA | 16..173 | 3..181 | 381 | 44.3 | Plus |
| CG15021-PA | 420 | CG15021-PA | 103..414 | 37..360 | 360 | 34.6 | Plus |
| CG10625-PD | 268 | CG10625-PD | 81..263 | 68..283 | 353 | 40.8 | Plus |
| CG10625-PA | 268 | CG10625-PA | 81..263 | 68..283 | 353 | 40.8 | Plus |
| CG10625-PD | 268 | CG10625-PD | 84..268 | 74..304 | 336 | 37.7 | Plus |
| CG10625-PA | 268 | CG10625-PA | 84..268 | 74..304 | 336 | 37.7 | Plus |
| CG10625-PD | 268 | CG10625-PD | 123..268 | 57..255 | 281 | 38.8 | Plus |
| CG10625-PA | 268 | CG10625-PA | 123..268 | 57..255 | 281 | 38.8 | Plus |
| CG10625-PD | 268 | CG10625-PD | 130..267 | 209..371 | 243 | 41.2 | Plus |
| CG10625-PA | 268 | CG10625-PA | 130..267 | 209..371 | 243 | 41.2 | Plus |
| CG10625-PD | 268 | CG10625-PD | 138..268 | 56..206 | 241 | 42.4 | Plus |
| CG10625-PA | 268 | CG10625-PA | 138..268 | 56..206 | 241 | 42.4 | Plus |
| CG14089-PA | 224 | CG14089-PA | 57..178 | 143..306 | 236 | 39.5 | Plus |
| CG14089-PA | 224 | CG14089-PA | 35..190 | 182..373 | 217 | 33 | Plus |
| CG10625-PD | 268 | CG10625-PD | 75..268 | 201..357 | 208 | 32.6 | Plus |
| CG10625-PA | 268 | CG10625-PA | 75..268 | 201..357 | 208 | 32.6 | Plus |
| CG10625-PD | 268 | CG10625-PD | 159..257 | 51..183 | 197 | 38.8 | Plus |
| CG10625-PA | 268 | CG10625-PA | 159..257 | 51..183 | 197 | 38.8 | Plus |
