BS27392.complete Sequence
990 bp assembled on 2011-09-16
GenBank Submission: KX800590
> BS27392.complete
GAAGTTATCAGTCGACATGCTGAACATCGTGTGTAGAGTCTGCGGAAGGC
AGAAAATCTGTGAGAAGAGCCTGAATCTCTTCGATTTGGTCAACCGAAAA
TATCTAAAGCACTTGCACATGATAAGCGGACTAAGATTGGTGGATTTGGA
CGATGTTCCTGGTTTCATGTGCCTTTGCTGTCAGGCGGAACTCAGATCGG
CATTGGCATTCCGGAAGCTTTGCATTAAGACCCAAACTAAATGGCTAACC
ATCGAGGACGACTCTTCGTCGGGTGATGAAGATACCAATGACAATTCGGA
ACTGGAATCGGAAAAATGCGCATTCAGCGATTTTGGGAAAAAGAAAGAAG
GCGAGTTGGTTGAAGAAACTTTTCAGGTACTGATTGAAGAGGAGCCCATG
GACAAAACTCTGAATAGAGATGCGAAAGCGCAGCTGAGGGAAGATGGAAT
AGATGAGAAGTGTGTACCTTCACAAAAGATTATCAAAGTATCAACCAAAC
TGGATGATCAGATTTACATATGCGAGCTGTGCGGGACTCATGCCACATCG
AAACCCACTTTCCAGCGCCACATGAGAAAACACAGAGGCGAACGACCATT
TGGCTGCAAGGATTGTGATGCCAGGTTTCTCTCTGCTGGCGAACTACGTG
CCCACCACCGGGTACATACTGGGGAGCAACCGTTTGCCTGTCGCTTCTGC
GAAAAGCGGTATGTCAGCTACATGGGCCGGCTGATCCACGAGCGGACTCA
CACCAACGATCGACCCTATGTGTGCGAAGAGTGTGGCAAGAAGTTCACCA
CTGCCTACGTCCTAAAGAACCACATGGTCATCCACACGGGCGAGAGGAAT
TTCCGATGCGATATTTGCGATCGCTCCTTCCAGAGAAAGGCGCACCTGGT
AACGCACACCAGATCCATGATGCACCTCCAAAATGTCAAGAAGCAGAAGT
CATGAAAGCTTTCTAGACCATTCGTTTGGCCCCTAAGCGG
BS27392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11762-RA | 939 | CG11762-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
| CG8159-RB | 1200 | CG8159-PB | 796..903 | 737..844 | 240 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11762-RA | 1141 | CG11762-RA | 1..945 | 12..956 | 4710 | 99.9 | Plus |
| CG8159-RB | 1328 | CG8159-RB | 870..977 | 737..844 | 240 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8725652..8726125 | 137..610 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 8726188..8726534 | 610..956 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 8725479..8725603 | 12..136 | 610 | 99.2 | Plus |
| 3R | 32079331 | 3R | 8727853..8727960 | 737..844 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:45 has no hits.
BS27392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 15:22:29 Download gff for
BS27392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 6..950 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:10 Download gff for
BS27392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 6..950 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:11 Download gff for
BS27392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 6..950 | 17..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:11 Download gff for
BS27392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8725484..8725603 | 17..136 | 100 | -> | Plus |
| 3R | 8725652..8726124 | 137..609 | 100 | -> | Plus |
| 3R | 8726188..8726539 | 610..961 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:10 Download gff for
BS27392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4551206..4551325 | 17..136 | 100 | -> | Plus |
| arm_3R | 4551374..4551846 | 137..609 | 100 | -> | Plus |
| arm_3R | 4551910..4552261 | 610..961 | 99 | | Plus |
BS27392.pep Sequence
Translation from 16 to 954
> BS27392.pep
MLNIVCRVCGRQKICEKSLNLFDLVNRKYLKHLHMISGLRLVDLDDVPGF
MCLCCQAELRSALAFRKLCIKTQTKWLTIEDDSSSGDEDTNDNSELESEK
CAFSDFGKKKEGELVEETFQVLIEEEPMDKTLNRDAKAQLREDGIDEKCV
PSQKIIKVSTKLDDQIYICELCGTHATSKPTFQRHMRKHRGERPFGCKDC
DARFLSAGELRAHHRVHTGEQPFACRFCEKRYVSYMGRLIHERTHTNDRP
YVCEECGKKFTTAYVLKNHMVIHTGERNFRCDICDRSFQRKAHLVTHTRS
MMHLQNVKKQKS*
BS27392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11762-PA | 312 | CG11762-PA | 1..312 | 1..312 | 1686 | 100 | Plus |
| CG8159-PB | 399 | CG8159-PB | 1..334 | 1..309 | 613 | 38.2 | Plus |
| ranshi-PA | 346 | CG9793-PA | 5..338 | 5..309 | 599 | 36.1 | Plus |
| CG8145-PB | 370 | CG8145-PB | 1..324 | 1..308 | 569 | 36.4 | Plus |
| CG8145-PC | 370 | CG8145-PC | 1..324 | 1..308 | 569 | 36.4 | Plus |
