Clone BS27395 Report

Search the DGRC for BS27395

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:273
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG15404-RA
Protein status:BS27395.pep: gold
Sequenced Size:401

Clone Sequence Records

BS27395.complete Sequence

401 bp assembled on 2011-09-16

GenBank Submission: KX804503

> BS27395.complete
GAAGTTATCAGTCGACATGGTTGCCAAGATTCTGCTGAGCCTGCTGCTCC
TCGCTGTTGTCACCGATCTGGTCTCAGCCCAGTGCTCCCAAAACCTGTGC
CCAGTGGTCACGAACTCGAATCCCCGGTGCAAGGGAAAACTTCAGTATCA
ATGCGTTTGCGACTACACCTGCTCCGAGTGGGACAAGCCCTGCAACTGGG
TACTTACATGTCCTGAAGAAATCGACGACATCAATGAAGTGCGCGACAAG
AGAAATAAGCTAAATTTGTTCAGATTGCCCAATCGAAACCGCCTGGAGTG
CCTGGACATCAATGTCTACACCATTACGCGTCCGAATTGCTGCGACTTGT
TCTGCAAGTCTAAGCTTAAAGATGTCTGTTTCTAAAAGCTTTCTAGACCA
T

BS27395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15404-RB 369 CG15404-PB 1..369 17..385 1845 100 Plus
CG15404-RA 369 CG15404-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15404-RB 468 CG15404-RB 16..390 12..386 1860 99.7 Plus
CG15404-RA 406 CG15404-RA 16..390 12..386 1860 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3173987..3174238 12..263 1245 99.6 Plus
2L 23513712 2L 3174304..3174426 264..386 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:33:10 has no hits.

BS27395.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:54 Download gff for BS27395.complete
Subject Subject Range Query Range Percent Splice Strand
CG15404-RA 4..370 17..383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:07 Download gff for BS27395.complete
Subject Subject Range Query Range Percent Splice Strand
CG15404-RA 4..370 17..383 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:35 Download gff for BS27395.complete
Subject Subject Range Query Range Percent Splice Strand
CG15404-RA 21..387 17..383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:35 Download gff for BS27395.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3173992..3174238 17..263 100 -> Plus
2L 3174304..3174423 264..383 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:07 Download gff for BS27395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3173992..3174238 17..263 100 -> Plus
arm_2L 3174304..3174423 264..383 100   Plus

BS27395.pep Sequence

Translation from 16 to 384

> BS27395.pep
MVAKILLSLLLLAVVTDLVSAQCSQNLCPVVTNSNPRCKGKLQYQCVCDY
TCSEWDKPCNWVLTCPEEIDDINEVRDKRNKLNLFRLPNRNRLECLDINV
YTITRPNCCDLFCKSKLKDVCF*

BS27395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15404-PB 122 CG15404-PB 1..122 1..122 674 100 Plus
CG15404-PA 122 CG15404-PA 1..122 1..122 674 100 Plus