Clone BS27408 Report

Search the DGRC for BS27408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:274
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3214-RA
Protein status:BS27408.pep: gold
Sequenced Size:461

Clone Sequence Records

BS27408.complete Sequence

461 bp assembled on 2011-09-07

GenBank Submission: KX801436

> BS27408.complete
GAAGTTATCAGTCGACATGGCAAAGTTTTTGGGCATCAACCGGCTGACAA
AGCTGTTCCAGATGGTCCGCGAAGCCGGAGGACTGAAGCAAGCGTACCTG
AAGCTCTATAGGAACGATGATCTGAAGATCGGAACCCTGGTGGGCATCGA
CAAGTACGGCAACAAGTACTTCGAGAACCCGTACTACTTCTACGGCCGCA
ATCGCTGGATCGAGTTCGCCCCCCACGTCAACATGGACTACGATGGATCC
ATGATTCCCGCCGAGTGGTACGGCTGGATGCACTACAAGACCGATCTGCC
TCCCATTCGCGATGGATGCCGCCCCAAGTACAAGTGGATAGCGGACCACA
GCGAGAATCTTTCCGGAACTAAGGAGGCCTACTACCCCTACTCCACAACA
CCCAACAAAGTGGAGGCCTGGGAACCCAAGGCGAAGAAGCAGTAGAAGCT
TTCTAGACCAT

BS27408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-RB 429 CG3214-PB 1..429 17..445 2145 100 Plus
CG3214-RA 429 CG3214-PA 1..429 17..445 2145 100 Plus
CG3214-RC 429 CG3214-PC 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-RB 618 CG3214-RB 33..463 15..445 2155 100 Plus
CG3214-RA 621 CG3214-RA 93..522 16..445 2150 100 Plus
CG3214-RC 677 CG3214-RC 149..578 16..445 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2579619..2579798 289..110 900 100 Minus
2L 23513712 2L 2579859..2579955 112..16 485 100 Minus
2L 23513712 2L 2579483..2579569 374..288 435 100 Minus
2L 23513712 2L 2579356..2579427 445..374 360 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:46:38 has no hits.

BS27408.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:13 Download gff for BS27408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 44..472 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:43 Download gff for BS27408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 35..463 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:37 Download gff for BS27408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3214-RB 35..463 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:37 Download gff for BS27408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2579356..2579426 375..445 100 <- Minus
2L 2579483..2579567 290..374 100 <- Minus
2L 2579619..2579796 112..289 100 <- Minus
2L 2579860..2579954 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:43 Download gff for BS27408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2579483..2579567 290..374 100 <- Minus
arm_2L 2579619..2579796 112..289 100 <- Minus
arm_2L 2579860..2579954 17..111 100   Minus
arm_2L 2579356..2579426 375..445 100 <- Minus

BS27408.pep Sequence

Translation from 16 to 444

> BS27408.pep
MAKFLGINRLTKLFQMVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNK
YFENPYYFYGRNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDG
CRPKYKWIADHSENLSGTKEAYYPYSTTPNKVEAWEPKAKKQ*

BS27408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3214-PB 142 CG3214-PB 1..142 1..142 797 100 Plus
CG3214-PA 142 CG3214-PA 1..142 1..142 797 100 Plus
CG3214-PC 142 CG3214-PC 1..142 1..142 797 100 Plus