BS27408.complete Sequence
461 bp assembled on 2011-09-07
GenBank Submission: KX801436
> BS27408.complete
GAAGTTATCAGTCGACATGGCAAAGTTTTTGGGCATCAACCGGCTGACAA
AGCTGTTCCAGATGGTCCGCGAAGCCGGAGGACTGAAGCAAGCGTACCTG
AAGCTCTATAGGAACGATGATCTGAAGATCGGAACCCTGGTGGGCATCGA
CAAGTACGGCAACAAGTACTTCGAGAACCCGTACTACTTCTACGGCCGCA
ATCGCTGGATCGAGTTCGCCCCCCACGTCAACATGGACTACGATGGATCC
ATGATTCCCGCCGAGTGGTACGGCTGGATGCACTACAAGACCGATCTGCC
TCCCATTCGCGATGGATGCCGCCCCAAGTACAAGTGGATAGCGGACCACA
GCGAGAATCTTTCCGGAACTAAGGAGGCCTACTACCCCTACTCCACAACA
CCCAACAAAGTGGAGGCCTGGGAACCCAAGGCGAAGAAGCAGTAGAAGCT
TTCTAGACCAT
BS27408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3214-RB | 429 | CG3214-PB | 1..429 | 17..445 | 2145 | 100 | Plus |
CG3214-RA | 429 | CG3214-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
CG3214-RC | 429 | CG3214-PC | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3214-RB | 618 | CG3214-RB | 33..463 | 15..445 | 2155 | 100 | Plus |
CG3214-RA | 621 | CG3214-RA | 93..522 | 16..445 | 2150 | 100 | Plus |
CG3214-RC | 677 | CG3214-RC | 149..578 | 16..445 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2579619..2579798 | 289..110 | 900 | 100 | Minus |
2L | 23513712 | 2L | 2579859..2579955 | 112..16 | 485 | 100 | Minus |
2L | 23513712 | 2L | 2579483..2579569 | 374..288 | 435 | 100 | Minus |
2L | 23513712 | 2L | 2579356..2579427 | 445..374 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:46:38 has no hits.
BS27408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:13 Download gff for
BS27408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3214-RB | 44..472 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:43 Download gff for
BS27408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3214-RB | 35..463 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:37 Download gff for
BS27408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3214-RB | 35..463 | 17..445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:37 Download gff for
BS27408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2579356..2579426 | 375..445 | 100 | <- | Minus |
2L | 2579483..2579567 | 290..374 | 100 | <- | Minus |
2L | 2579619..2579796 | 112..289 | 100 | <- | Minus |
2L | 2579860..2579954 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:43 Download gff for
BS27408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2579483..2579567 | 290..374 | 100 | <- | Minus |
arm_2L | 2579619..2579796 | 112..289 | 100 | <- | Minus |
arm_2L | 2579860..2579954 | 17..111 | 100 | | Minus |
arm_2L | 2579356..2579426 | 375..445 | 100 | <- | Minus |
BS27408.pep Sequence
Translation from 16 to 444
> BS27408.pep
MAKFLGINRLTKLFQMVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNK
YFENPYYFYGRNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDG
CRPKYKWIADHSENLSGTKEAYYPYSTTPNKVEAWEPKAKKQ*
BS27408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3214-PB | 142 | CG3214-PB | 1..142 | 1..142 | 797 | 100 | Plus |
CG3214-PA | 142 | CG3214-PA | 1..142 | 1..142 | 797 | 100 | Plus |
CG3214-PC | 142 | CG3214-PC | 1..142 | 1..142 | 797 | 100 | Plus |