Clone BS27418 Report

Search the DGRC for BS27418

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:274
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptObp59a-RB
Protein status:BS27418.pep: gold
Sequenced Size:641

Clone Sequence Records

BS27418.complete Sequence

641 bp assembled on 2011-09-07

GenBank Submission: KX801996

> BS27418.complete
GAAGTTATCAGTCGACATGAAACAGTTGATTTTCCTGCTGATTTGTTTGA
GCTGCGGCACCTGCTCCATTTACGCACTGAAATGCAGATCCCAGGAGGGA
CTAAGTGAAGCGGAGCTCAAGCGAACTGTGCGCAACTGTATGCATCGCCA
GGACGAGGACGAAGATCGAGGACGAGGTGGACAGGGCCGGCAAGGAAATG
GCTATGAGTACGGTTACGGAATGGATCACGATCAGGAGGAGCAGGACAGG
AATCCAGGCAACAGGGGCGGCTATGGCAATCGAAGGCAGCGAGGACTAAG
GCAATCGGATGGCAGGAACCACACCAGCAACGATGGAGGTCAGTGTGTGG
CCCAGTGCTTTTTCGAGGAGATGAATATGGTGGATGGCAATGGGATGCCC
GATCGGCGCAAGGTGAGCTATTTGCTGACCAAGGACCTTCGGGACCGGGA
GCTGCGCAACTTCTTCACGGACACCGTGCAGCAGTGCTTCCGCTATCTGG
AGAGCAACGGAAGGGGCCGGCACCACAAGTGTTCAGCGGCCCGGGAACTG
GTCAAGTGCATGTCGGAGTACGCGAAGGCGCAGTGCGAGGATTGGGAGGA
GCACGGCAACATGCTCTTCAATTAGAAGCTTTCTAGACCAT

BS27418.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-RB 609 CG13517-PB 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-RB 1011 CG13517-RB 23..631 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22702717..22703081 17..381 1825 100 Plus
2R 25286936 2R 22703160..22703406 379..625 1235 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:47:31 has no hits.

BS27418.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-07 10:56:16 Download gff for BS27418.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:04 Download gff for BS27418.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 23..631 17..625 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:52 Download gff for BS27418.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 23..631 17..625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:52 Download gff for BS27418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22703161..22703406 380..625 100   Plus
2R 22702717..22703079 17..379 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:04 Download gff for BS27418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18590222..18590584 17..379 100 -> Plus
arm_2R 18590666..18590911 380..625 100   Plus

BS27418.pep Sequence

Translation from 16 to 624

> BS27418.pep
MKQLIFLLICLSCGTCSIYALKCRSQEGLSEAELKRTVRNCMHRQDEDED
RGRGGQGRQGNGYEYGYGMDHDQEEQDRNPGNRGGYGNRRQRGLRQSDGR
NHTSNDGGQCVAQCFFEEMNMVDGNGMPDRRKVSYLLTKDLRDRELRNFF
TDTVQQCFRYLESNGRGRHHKCSAARELVKCMSEYAKAQCEDWEEHGNML
FN*

BS27418.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-PB 202 CG13517-PB 1..202 1..202 1114 100 Plus