Clone BS27434 Report

Search the DGRC for BS27434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:274
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG14340-RA
Protein status:BS27434.pep: gold
Sequenced Size:827

Clone Sequence Records

BS27434.complete Sequence

827 bp assembled on 2011-09-16

GenBank Submission: KX800664

> BS27434.complete
GAAGTTATCAGTCGACATGGCCCACGGAGGAGGCATCAGCTCGTTGGCCG
GGCTGGAGGAGAAGCCAGCGGCCTGTGTGGCCAGCAGCACGGCCTTGGCC
ATTAGGAACTCGACCATAATCGCCCATCGGCTGTCCATTTACCTGCCGCA
GCTGCTGCTGCCCTCTCGGGATCCCCAGAAGCTCATTACCGAAATCAACT
GCTACGTGGCCCAGTTTCGGGAGCTGCTCATCTTTATTGGCCAGGCCCGC
GATTCGCCAGAGCTGCGCGAGAAGATCAGGAAGCTGAGGCGCAGCTGTGT
GGATGCCTGCAAGCACACCGCCCACTTAATCACTCCCCAGCCGCGCCACT
GCCTGGGCAGCCCCAGTGAGAGGATGCACTTGACCCTGCTCTACCACCTC
ACGTTGCAGTTCCAGCACGAGTTGATCAAGAGCCATCGCTTGATCCAACT
GGTGCCGCTGGACATGACGGAGTACTATGCTCCTTCCCGCACTGCTCCAT
CCAATCTGGGCAATGTCATCAGCCAATTCTTGCTGTGCAAGCAGATAAAT
CCCGATTTCCAGCAGGAGGAGCTGTGCAGCATTGTCAAGGACTCGCAGGA
GCTTAGCGAGCTCTTGGAGGAGTTGCAGGCTCACATGCCCTTGACCGAGG
CCTCTCCAGAATTCGACCTGGATCCAACACAGAAATCTGAAAGTAGCCTT
GTTTCCCTCAACACTCCGGATTGGTATGCCCGGCAGCGCAGAAGGAGTTG
CAAGAGCCGGAGTCGTAGTCTTTGTTGCTGCCTGGCCAGGAAGTCACACA
AAACCTTTTAGAAGCTTTCTAGACCAT

BS27434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14340-RA 795 CG14340-PA 1..795 17..811 3975 100 Plus
CG34351-RD 702 CG34351-PD 405..509 496..600 180 78.1 Plus
CG34351-RC 681 CG34351-PC 405..509 496..600 180 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14340-RA 1030 CG14340-RA 46..845 15..814 4000 100 Plus
CG34351-RD 3223 CG34351-RD 935..1039 496..600 180 78.1 Plus
CG34351-RC 3223 CG34351-RC 935..1039 496..600 180 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1113202..1113501 180..479 1500 100 Plus
2L 23513712 2L 1113558..1113769 479..690 1045 99.5 Plus
2L 23513712 2L 1112986..1113152 15..181 835 100 Plus
2L 23513712 2L 1113826..1113953 687..814 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:48:01 has no hits.

BS27434.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:49 Download gff for BS27434.complete
Subject Subject Range Query Range Percent Splice Strand
CG14340-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:03 Download gff for BS27434.complete
Subject Subject Range Query Range Percent Splice Strand
CG14340-RA 48..842 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:09 Download gff for BS27434.complete
Subject Subject Range Query Range Percent Splice Strand
CG14340-RA 48..842 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:09 Download gff for BS27434.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1112988..1113152 17..181 100 -> Plus
2L 1113204..1113501 182..479 100 -> Plus
2L 1113559..1113765 480..686 100 -> Plus
2L 1113826..1113950 687..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:03 Download gff for BS27434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1113559..1113765 480..686 100 -> Plus
arm_2L 1113826..1113950 687..811 100   Plus
arm_2L 1112988..1113152 17..181 100 -> Plus
arm_2L 1113204..1113501 182..479 100 -> Plus

BS27434.pep Sequence

Translation from 16 to 810

> BS27434.pep
MAHGGGISSLAGLEEKPAACVASSTALAIRNSTIIAHRLSIYLPQLLLPS
RDPQKLITEINCYVAQFRELLIFIGQARDSPELREKIRKLRRSCVDACKH
TAHLITPQPRHCLGSPSERMHLTLLYHLTLQFQHELIKSHRLIQLVPLDM
TEYYAPSRTAPSNLGNVISQFLLCKQINPDFQQEELCSIVKDSQELSELL
EELQAHMPLTEASPEFDLDPTQKSESSLVSLNTPDWYARQRRRSCKSRSR
SLCCCLARKSHKTF*

BS27434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14340-PA 264 CG14340-PA 1..264 1..264 1369 100 Plus
CG34351-PC 226 CG34351-PC 30..225 56..261 494 49.5 Plus
CG34351-PD 233 CG34351-PD 30..225 56..261 494 49.5 Plus