BS27434.complete Sequence
827 bp assembled on 2011-09-16
GenBank Submission: KX800664
> BS27434.complete
GAAGTTATCAGTCGACATGGCCCACGGAGGAGGCATCAGCTCGTTGGCCG
GGCTGGAGGAGAAGCCAGCGGCCTGTGTGGCCAGCAGCACGGCCTTGGCC
ATTAGGAACTCGACCATAATCGCCCATCGGCTGTCCATTTACCTGCCGCA
GCTGCTGCTGCCCTCTCGGGATCCCCAGAAGCTCATTACCGAAATCAACT
GCTACGTGGCCCAGTTTCGGGAGCTGCTCATCTTTATTGGCCAGGCCCGC
GATTCGCCAGAGCTGCGCGAGAAGATCAGGAAGCTGAGGCGCAGCTGTGT
GGATGCCTGCAAGCACACCGCCCACTTAATCACTCCCCAGCCGCGCCACT
GCCTGGGCAGCCCCAGTGAGAGGATGCACTTGACCCTGCTCTACCACCTC
ACGTTGCAGTTCCAGCACGAGTTGATCAAGAGCCATCGCTTGATCCAACT
GGTGCCGCTGGACATGACGGAGTACTATGCTCCTTCCCGCACTGCTCCAT
CCAATCTGGGCAATGTCATCAGCCAATTCTTGCTGTGCAAGCAGATAAAT
CCCGATTTCCAGCAGGAGGAGCTGTGCAGCATTGTCAAGGACTCGCAGGA
GCTTAGCGAGCTCTTGGAGGAGTTGCAGGCTCACATGCCCTTGACCGAGG
CCTCTCCAGAATTCGACCTGGATCCAACACAGAAATCTGAAAGTAGCCTT
GTTTCCCTCAACACTCCGGATTGGTATGCCCGGCAGCGCAGAAGGAGTTG
CAAGAGCCGGAGTCGTAGTCTTTGTTGCTGCCTGGCCAGGAAGTCACACA
AAACCTTTTAGAAGCTTTCTAGACCAT
BS27434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14340-RA | 795 | CG14340-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG34351-RD | 702 | CG34351-PD | 405..509 | 496..600 | 180 | 78.1 | Plus |
CG34351-RC | 681 | CG34351-PC | 405..509 | 496..600 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14340-RA | 1030 | CG14340-RA | 46..845 | 15..814 | 4000 | 100 | Plus |
CG34351-RD | 3223 | CG34351-RD | 935..1039 | 496..600 | 180 | 78.1 | Plus |
CG34351-RC | 3223 | CG34351-RC | 935..1039 | 496..600 | 180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1113202..1113501 | 180..479 | 1500 | 100 | Plus |
2L | 23513712 | 2L | 1113558..1113769 | 479..690 | 1045 | 99.5 | Plus |
2L | 23513712 | 2L | 1112986..1113152 | 15..181 | 835 | 100 | Plus |
2L | 23513712 | 2L | 1113826..1113953 | 687..814 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:48:01 has no hits.
BS27434.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:49 Download gff for
BS27434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14340-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:03 Download gff for
BS27434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14340-RA | 48..842 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:09 Download gff for
BS27434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14340-RA | 48..842 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:09 Download gff for
BS27434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1112988..1113152 | 17..181 | 100 | -> | Plus |
2L | 1113204..1113501 | 182..479 | 100 | -> | Plus |
2L | 1113559..1113765 | 480..686 | 100 | -> | Plus |
2L | 1113826..1113950 | 687..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:03 Download gff for
BS27434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1113559..1113765 | 480..686 | 100 | -> | Plus |
arm_2L | 1113826..1113950 | 687..811 | 100 | | Plus |
arm_2L | 1112988..1113152 | 17..181 | 100 | -> | Plus |
arm_2L | 1113204..1113501 | 182..479 | 100 | -> | Plus |
BS27434.pep Sequence
Translation from 16 to 810
> BS27434.pep
MAHGGGISSLAGLEEKPAACVASSTALAIRNSTIIAHRLSIYLPQLLLPS
RDPQKLITEINCYVAQFRELLIFIGQARDSPELREKIRKLRRSCVDACKH
TAHLITPQPRHCLGSPSERMHLTLLYHLTLQFQHELIKSHRLIQLVPLDM
TEYYAPSRTAPSNLGNVISQFLLCKQINPDFQQEELCSIVKDSQELSELL
EELQAHMPLTEASPEFDLDPTQKSESSLVSLNTPDWYARQRRRSCKSRSR
SLCCCLARKSHKTF*
BS27434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14340-PA | 264 | CG14340-PA | 1..264 | 1..264 | 1369 | 100 | Plus |
CG34351-PC | 226 | CG34351-PC | 30..225 | 56..261 | 494 | 49.5 | Plus |
CG34351-PD | 233 | CG34351-PD | 30..225 | 56..261 | 494 | 49.5 | Plus |