Clone BS27456 Report

Search the DGRC for BS27456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:274
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG43779-RA
Protein status:BS27456.pep: gold
Sequenced Size:803

Clone Sequence Records

BS27456.complete Sequence

803 bp assembled on 2011-09-16

GenBank Submission: KX804731

> BS27456.complete
GAAGTTATCAGTCGACATGAATGATCAGCCAGTCGATGGCGTCGTGCGCC
TTCGTCTCAAGGTGGCCCAGTGGATCTACGGCATTGCGGCGCTGTTCATT
GTCCTGGCCATTGGGCTGCTCATCTTGCCGGGCCTGTTCAGACGATACCT
CCTGGTTCCGGATGTAGTGGCTACCTATTGCTTCTTTGTCATCGGATTGG
TCACCCTGTGCGTCTATGTCAACGTCACTTGGCTGCGCCGGAAGTTCCCC
TTCAACTGGATAGTCAGCTGCTGCATAGCAGCCTGTCTGGCACTGGGAAC
GGTGTGTATCCTTTCAAACCAGCGGACGGGACACGTCCTGCTGCTGAGCA
TGGAGATTCTTGTCATGATGGCGCTGCTCCTGCTGGTCGGCTCATATCTA
TTGCCCGAATGCCCTGCAATGGCCTACTTGTTCCTCACTTGGTTCATATT
CGTTGTGCTCTCCTCCGTCCTAATGGCCGCCGTTTGTGTACACGTTTCAG
ATCAGATATTCTCCTATGAAGTAGCCACCCACTTTGTGCTCTGGCAAGTT
ATATGCCCATTGATTGTGTTCCAGGCGCAGGTCATATCCGGCTATTGGGA
GAATTTACCGCCAATTCTGGATAGGCCGCTGTGCTCCACGATGCTCCTGT
TCGACTTTCTCGCCTGCTACATCTTTCTTGACTCCGCCAATGACGTTGGT
TTTGAGTTCTACTACGCTGGCCAGACGGCAAATCAAAAGTTTTTGTCCAG
ATCCGTTAAGAGCCAGTGGGAGATGTTCATGGATTAGAAGCTTTCTAGAC
CAT

BS27456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG43779-RA 771 CG43779-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG43779-RA 836 CG43779-RA 1..771 17..787 3855 100 Plus
CG16825-RB 3020 CG16825-RB 1198..1968 787..17 3855 100 Minus
CG16825-RA 1888 CG16825-RA 66..836 787..17 3855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13305985..13306755 787..17 3855 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:48:24 has no hits.

BS27456.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:49 Download gff for BS27456.complete
Subject Subject Range Query Range Percent Splice Strand
CG15639-RB 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:11 Download gff for BS27456.complete
Subject Subject Range Query Range Percent Splice Strand
CG16825-RA 66..836 17..787 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:17 Download gff for BS27456.complete
Subject Subject Range Query Range Percent Splice Strand
CG16825-RA 66..836 17..787 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:17 Download gff for BS27456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13305985..13306755 17..787 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:11 Download gff for BS27456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13305985..13306755 17..787 100   Minus

BS27456.pep Sequence

Translation from 16 to 786

> BS27456.pep
MNDQPVDGVVRLRLKVAQWIYGIAALFIVLAIGLLILPGLFRRYLLVPDV
VATYCFFVIGLVTLCVYVNVTWLRRKFPFNWIVSCCIAACLALGTVCILS
NQRTGHVLLLSMEILVMMALLLLVGSYLLPECPAMAYLFLTWFIFVVLSS
VLMAAVCVHVSDQIFSYEVATHFVLWQVICPLIVFQAQVISGYWENLPPI
LDRPLCSTMLLFDFLACYIFLDSANDVGFEFYYAGQTANQKFLSRSVKSQ
WEMFMD*

BS27456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG43779-PA 256 CG43779-PA 1..256 1..256 1342 100 Plus