BS27457.complete Sequence
1316 bp assembled on 2011-09-09
GenBank Submission: KX801764
> BS27457.complete
GAAGTTATCAGTCGACATGTGGTGCGGTGCCTTGTCGATTGTGTGTCTGA
TATTCCTTTTCGGAATATCCGAGGCCCGCAAAGGATTTGGTCCTGGCGAA
CAGGACTGGGGTTATGTGGACGTCCGCGATGGGGCTCACATGTTCTACTG
GCTATATTACACCACTGCGAATGTGAGCAGTTATACTGATCGACCGCTGG
TTCTGTGGCTCCAGGGCGGACCTGGTGGCTCCTCCACAGCCCTGGGAAAT
TTCCAGGAGCTGGGACCTGTGGACACGAATGGTCAGCCGCGAGACGGAAA
CTGGGTACAGTACGTCAACGTGCTGTTCATTGACAATCCCGTGGGATCGG
GGTTTAGCTATGCGGATAACACCAGTCTGCTGGTTACCAACAATGAGGAG
CTCATCGACGATCTGATTAGCTTCATGCTGCACTTCTATAAATTGCACAA
AGAGTTCAAGAACGTCCCACTCCACATATTCTCGGAGAGTTATGGTGGTA
AAATGGCCCCCGCCCTGGCCATTCGACTGGCTAAAGCCATGAGCGCCGGT
GAGTTGGCGCATCCGGGAACTCTTAAGTCAGTGACTATCGGCAATCCTTG
GATATCAACTCGGCACATCAGCCGCGAGCACTCCAAGTATTTGTTCGTCA
ATGGTTTGATCGACGAGGATGGGGTAGCCCTACTCGATGCCCAGGAGGAA
CGAATCTTAAGTGCTCTCAAGAAACACGAGTTTGATAAGGCCACTGATGA
GTACTTGAGGTGGTATGAACTCATGCAGCAACTGACTGGTGAGATCTACC
TTTACAATACACAGACCCACGTGGATCCTTCAGAGGATAGAACCTACGGC
TATGGAGAAGAATTTATCCGCTTCATAGAGCGAAATGTCAGTGAGGCCCT
GCAGATCAATGGTACTGTCTATGCGTCACAGGTTATGGAAGTGTTGTCCA
GCCTTCACGGAGATCGCCTGAAATCGGAAATTAATACAATCCCGCGCCTG
CTGAATGAGACCTCTGTTAAGGTAAATATTTATTCTGGCCAGTTGGACAC
TTTAGTGCCGACCACAGCCACATTGGCTCTGATCAAGGACTGGGCATGGA
ATGACAAATCGGAATATCTGGAGGCCAATCGCACAACCATAGTTATCAAA
GGCATACTTCAGGGTTACAAAAAGGTCGGAGGCAACTTCGGGATGTACTG
GATAAATCGGTCGGGCCACATGGCCCCGTCAGATAATCCAGTCGCCATGC
AGTATGTCCTTCAATCCGTTACGCAATATGACAGCTATAATATTGAATAA
AAGCTTTCTAGACCAT
BS27457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31821-RB | 1284 | CG31821-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| CG31821-RA | 1284 | CG31821-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| CG3344-RA | 1341 | CG3344-PA | 70..227 | 77..234 | 235 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31821-RB | 1423 | CG31821-RB | 34..1317 | 17..1300 | 6420 | 100 | Plus |
| CG31821-RA | 1373 | CG31821-RA | 34..1317 | 17..1300 | 6420 | 100 | Plus |
| CG3344-RA | 1480 | CG3344-RA | 160..317 | 77..234 | 235 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15901405..15902377 | 989..17 | 4865 | 100 | Minus |
| 2L | 23513712 | 2L | 15901041..15901351 | 1300..990 | 1555 | 100 | Minus |
| 3L | 28110227 | 3L | 687213..687370 | 234..77 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:02:08 has no hits.
BS27457.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 17:29:29 Download gff for
BS27457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 1..1282 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:02 Download gff for
BS27457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 17..1298 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:20 Download gff for
BS27457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 34..1315 | 17..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:20 Download gff for
BS27457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15901043..15901351 | 990..1298 | 100 | <- | Minus |
| 2L | 15901405..15902377 | 17..989 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:02 Download gff for
BS27457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15901405..15902377 | 17..989 | 100 | | Minus |
| arm_2L | 15901043..15901351 | 990..1298 | 100 | <- | Minus |
BS27457.pep Sequence
Translation from 16 to 1299
> BS27457.pep
MWCGALSIVCLIFLFGISEARKGFGPGEQDWGYVDVRDGAHMFYWLYYTT
ANVSSYTDRPLVLWLQGGPGGSSTALGNFQELGPVDTNGQPRDGNWVQYV
NVLFIDNPVGSGFSYADNTSLLVTNNEELIDDLISFMLHFYKLHKEFKNV
PLHIFSESYGGKMAPALAIRLAKAMSAGELAHPGTLKSVTIGNPWISTRH
ISREHSKYLFVNGLIDEDGVALLDAQEERILSALKKHEFDKATDEYLRWY
ELMQQLTGEIYLYNTQTHVDPSEDRTYGYGEEFIRFIERNVSEALQINGT
VYASQVMEVLSSLHGDRLKSEINTIPRLLNETSVKVNIYSGQLDTLVPTT
ATLALIKDWAWNDKSEYLEANRTTIVIKGILQGYKKVGGNFGMYWINRSG
HMAPSDNPVAMQYVLQSVTQYDSYNIE*
BS27457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31821-PB | 427 | CG31821-PB | 1..427 | 1..427 | 2259 | 100 | Plus |
| CG31821-PA | 427 | CG31821-PA | 1..427 | 1..427 | 2259 | 100 | Plus |
| CG32483-PA | 439 | CG32483-PA | 2..438 | 5..421 | 911 | 44.1 | Plus |
| CG3344-PA | 446 | CG3344-PA | 5..445 | 7..421 | 909 | 42.8 | Plus |
| CG31823-PA | 427 | CG31823-PA | 16..426 | 3..421 | 868 | 41.2 | Plus |
