Clone BS27468 Report

Search the DGRC for BS27468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:274
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG30356-RA
Protein status:BS27468.pep: gold
Sequenced Size:482

Clone Sequence Records

BS27468.complete Sequence

482 bp assembled on 2011-09-16

GenBank Submission: KX805097

> BS27468.complete
GAAGTTATCAGTCGACATGGGACGTGCTGTAAAAAATAATAGAGTAAGGT
CGGCCCATTGCAACAGTGCCGCCAAGGCGACGTCAATCAGTGGACATTCG
ATGCTAAAGCAAAACAACGATTGCAATGGACGCAACCCGTTCTTTCAGTT
TCTGGCCTACTTTCGAAAATGTTCCAACAACTGCCTTGGCCACTTGCCGT
CGGATCGGGTAACTCTAATTGCCGGCAAGGTGTGGAATTACATGAGTCTG
TCGGAGAAAGAACCCTTTATCGCTGCTGCGCGAAGATTTAACTACACGTA
TCGATCGCGGAGCAGAAAAGTCAACTGGGTCCTGGCGCAACTGCGAAAAT
CCGCTGCTGGGGAAGAATGCCGACCACAGGCACAGTGGATGTTGATGAAC
TTTTTAAAGTCTTGGCAGGAATCTGTGGTGAGGAACCTTCTCGACTTGGA
TCACAATCAAAACTAAAAGCTTTCTAGACCAT

BS27468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30356-RA 450 CG30356-PA 1..450 17..466 2235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30356-RA 538 CG30356-RA 37..487 17..467 2240 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8729015..8729465 467..17 2240 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:31:33 has no hits.

BS27468.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 10:15:52 Download gff for BS27468.complete
Subject Subject Range Query Range Percent Splice Strand
CG30356-RA 38..479 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:35 Download gff for BS27468.complete
Subject Subject Range Query Range Percent Splice Strand
CG30356-RA 37..478 17..458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:07 Download gff for BS27468.complete
Subject Subject Range Query Range Percent Splice Strand
CG30356-RA 37..478 17..458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:07 Download gff for BS27468.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729024..8729465 17..458 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:35 Download gff for BS27468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4616529..4616970 17..458 99   Minus

BS27468.pep Sequence

Translation from 16 to 465

> BS27468.pep
MGRAVKNNRVRSAHCNSAAKATSISGHSMLKQNNDCNGRNPFFQFLAYFR
KCSNNCLGHLPSDRVTLIAGKVWNYMSLSEKEPFIAAARRFNYTYRSRSR
KVNWVLAQLRKSAAGEECRPQAQWMLMNFLKSWQESVVRNLLDLDHNQN*

BS27468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30356-PA 149 CG30356-PA 1..149 1..149 798 100 Plus