BS27471.complete Sequence
1115 bp assembled on 2011-09-16
GenBank Submission: KX805393
> BS27471.complete
GAAGTTATCAGTCGACATGGCTTCGTTCCGGTTTCAATTGTTGCAGCTCC
TAGTGGTTCTCAGCCAAGGTTGGGCCAACCTCAACGTGCAGAACAACTAT
AGAAACATGATGGTCCGACTGGCCACTAACAAGGCAGCGCTCGCCGGTAT
TCAAGTCCTCCGCGAGGGACGCGTGGAGGTGAGCTTTGACTTTGGCGCCT
CATGGGGTACGATCTGCAGCACTTCGTGGAGCATGCGGGAGGCAAATGTG
GTGTGCCGACAGCTAGGATTGGGCTACGCTTCCAAGGCAAGCCAGGGAAC
GGAGCACGGGGATAGCCGGAAGTATCCCTGGGGCATGGTGGGCACTCTGT
GCAGGGGAACCGAGCGTCGCCTAGCCGACTGCATCCGGGAGTCCCACTAC
CCGAACCTCTGCAATGCCAGAAACCATAATGTCAGCATTGCGGCCTGTGT
TAGCCATTCGGCTGACCTGGAGATCGGACTGGTGGACATCGAGAGAACCG
CCCGCCTGGAGGCCGTGCCCATGTCGCGGCTCACATGCGCCATGGAAGAG
CACTGTGTTTCCGCCGACGCTTACGAGATCCGAAGGACGAATCCACACGC
TGCGAGGATACTGCTTCGCTTTTCCGTTAAGGCTTCCAATGTGGGCACCG
CCGATGTAAGCCCATACGCTAACTACAAGGAATGGGTATGGCACCAGTGC
CACAGACACTACCACAGCATGAATGTTTTTGCCACCTTTGATGTTTACGA
CCTCAACTACCGGAAGGTGGCCCAGGGGCACAAGGCCTCCTTTTGCCTGA
TGGACAGTGAATGCCGGCCAGGAGTACGGCAAAAGTACACCTGTGGCAAC
ACCACCCAAGGCATTTCCGTGGGCTGCGCAGACACCTACACCGATGTGTT
GGACTGCCAGTGGGTGGATGTTACCCGAGTTCCCATCAACCGACGCTACA
TCCTGCGAGTGGCCCTCAATCCCGAGTACAAGCTGGGAGAGATATCCTTC
GAGAACAACGGAGCTGAGTGCCTTCTTGACTACACTGGCGTACGGCAGAC
GACAAGGATTTTCAACTGTCGGCGAAAGCCGCTTTGGTTTAAGATTTGAA
AGCTTTCTAGACCAT
BS27471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-RA | 1083 | CG11335-PA | 1..1083 | 17..1099 | 5400 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-RA | 1435 | CG11335-RA | 149..1231 | 17..1099 | 5400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31458877..31459721 | 861..17 | 4210 | 99.9 | Minus |
| 3R | 32079331 | 3R | 31458584..31458824 | 1099..859 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:41:10 has no hits.
BS27471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 14:07:12 Download gff for
BS27471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1230 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:25 Download gff for
BS27471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1230 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:48 Download gff for
BS27471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1230 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:48 Download gff for
BS27471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31458585..31458822 | 861..1098 | 100 | <- | Minus |
| 3R | 31458878..31459721 | 17..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:25 Download gff for
BS27471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27284307..27284544 | 861..1098 | 100 | <- | Minus |
| arm_3R | 27284600..27285443 | 17..860 | 99 | | Minus |
BS27471.pep Sequence
Translation from 16 to 1098
> BS27471.pep
MASFRFQLLQLLVVLSQGWANLNVQNNYRNMMVRLATNKAALAGIQVLRE
GRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDS
RKYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVSHSAD
LEIGLVDIERTARLEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAARILL
RFSVKASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFDVYDLNYRK
VAQGHKASFCLMDSECRPGVRQKYTCGNTTQGISVGCADTYTDVLDCQWV
DVTRVPINRRYILRVALNPEYKLGEISFENNGAECLLDYTGVRQTTRIFN
CRRKPLWFKI*
BS27471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-PA | 360 | CG11335-PA | 1..360 | 1..360 | 1935 | 100 | Plus |
| lox2-PA | 511 | CG4402-PA | 203..507 | 50..352 | 745 | 48.2 | Plus |
