BS27488.complete Sequence
725 bp assembled on 2011-09-19
GenBank Submission: KX802367
> BS27488.complete
GAAGTTATCAGTCGACATGTTCGCAAAGCAAGCCAAGATCTTGGTCTTCT
GCCTTTCCCTGGGCCTCTCGCTGGCTGTGAAGCTGCAAATTCCCTTTAGA
CCAGACGCCCACATCCAGGAGCTGCAGCTGCAGAGCAGGGAGCTGGCCGA
AGTCCACTCAGATCACTCCACGCAGTGCTTCTCGATCTACAAGCCCAAAT
TGGCCAAAATTGCGGATCAGTTCGAAACTAACTTTACGGCTTGCATCTCG
GCCTATGACAATTGCACATCCCATATCAGCGAGAAGTATGCCGAGGATCG
CCAGATCCTTCTCAGGTCCGCCAACATCGGCTGCTCGTATCCCAACTCCA
ATTGCCAGGTCTGGACTCTTGAGCAGCAGCCGCTGGACACCGTGGTCTCC
CGCCTCGAATGCGCCTCCACCAACTCGGCCGAGAGCTCCAAGACCTTCTA
TGCCATTTCGGCCAATGCCACGCAGATTGCAGTTCAGATCCAGGAGCAAT
ATACGATCCTAGAGAGCCGGAAGAGTGTTTGCATCAATGACGCAAATCGC
TCCTATGTGGAAGACACCTCCGATACATACGAGCTTTTGAACAACTGCCT
CAAGAACGGACCAACCACCACAACTTGTAATCCATTGACTTACCCTACAA
CAACCACAGCAACAACAACAACAACAACAATAACAACCGCAGCACCTTTA
CTTCGTTAAAAGCTTTCTAGACCAT
BS27488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11470-RB | 693 | CG11470-PB | 1..693 | 17..709 | 3450 | 99.9 | Plus |
| CG11470-RA | 693 | CG11470-PA | 1..693 | 17..709 | 3450 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11470-RB | 770 | CG11470-RB | 1..696 | 17..712 | 3465 | 99.9 | Plus |
| CG11470-RA | 727 | CG11470-RA | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29589067..29589762 | 712..17 | 3465 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:44:39 has no hits.
BS27488.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 13:58:57 Download gff for
BS27488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11470-RA | 6..691 | 22..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:46 Download gff for
BS27488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11470-RA | 6..691 | 22..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:43 Download gff for
BS27488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11470-RA | 6..691 | 22..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:43 Download gff for
BS27488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29589072..29589757 | 22..707 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:46 Download gff for
BS27488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25414794..25415479 | 22..707 | 99 | | Minus |
BS27488.pep Sequence
Translation from 16 to 708
> BS27488.pep
MFAKQAKILVFCLSLGLSLAVKLQIPFRPDAHIQELQLQSRELAEVHSDH
STQCFSIYKPKLAKIADQFETNFTACISAYDNCTSHISEKYAEDRQILLR
SANIGCSYPNSNCQVWTLEQQPLDTVVSRLECASTNSAESSKTFYAISAN
ATQIAVQIQEQYTILESRKSVCINDANRSYVEDTSDTYELLNNCLKNGPT
TTTCNPLTYPTTTTATTTTTTITTAAPLLR*
BS27488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11470-PB | 230 | CG11470-PB | 1..230 | 1..230 | 1187 | 100 | Plus |
| CG11470-PA | 230 | CG11470-PA | 1..230 | 1..230 | 1187 | 100 | Plus |
| CG7567-PA | 211 | CG7567-PA | 5..210 | 2..212 | 226 | 30.6 | Plus |
| CG5767-PA | 253 | CG5767-PA | 7..236 | 10..227 | 221 | 28.6 | Plus |
| CG10911-PA | 359 | CG10911-PA | 4..216 | 7..226 | 217 | 23.8 | Plus |
