BS27490.complete Sequence
1352 bp assembled on 2011-09-09
GenBank Submission: KX801171
> BS27490.complete
GAAGTTATCAGTCGACATGTCGATTCGGTTGGTAGCACTCCTGGCATTGT
TCGCCGCCTTGGCGCATGGCAAACCCGGATACGGTCCCGGAGAGCAGGAC
TGGGGCTACGTAGATGTGCGTCCCGGTGCCCACATGTTCTACTGGCTGTA
CTACACCACCGCCAATGTTTCGAGCTATACCGAAAGACCATTAGCCATTT
GGCTCCAAGGAGGTCCCGGTGCCTCTTCGACGGGGTATGGAAACTTTGAA
GAACTTGGGCCCGTCGATTTGTACGGAGATTGGCGCAGCTGGACCTGGGT
GAAGGACATGAATGTCCTCTTTATTGACAACCCCGTAGGCAGTGGTTTTA
GCTACGTGGACAACACGGCCTTTTACACGGCCACCAATAAGGAGATCGCT
CTAGATTTGGTTGAGCTGATGAAGGGATTCTATACCCTGCATCCAGAGTT
CGAGGAGGTGCCGCTGCATATATTCTGCGAGAGTTACGGTGGAAAGATGG
CGCCGGAGTTTGCACTCGAACTGTACTACGCCAAGAAGCGTGGTGAGGTC
AAGAGCAACCTTACCTCGGTGGCTTTGGGGGATCCATGGACCTCGCCCAT
CGACTCCGTGCTCGCATGGGGACCTTTTCTCAGAGAAATGGGAATCGTGG
ACCACGCGGGATACAATGCCATTCAAGAGGCAGCGAACTTCACGGCTCAG
TTGGTGGAGGAGGAGCGATGGATTCAGGCCACCTATCAGTGGGGCAACAC
CCAGTGGGAGGTGATGAAAGCCTCCAAGGGTGTGGACTTCTACAACGTGC
TGAAGGAGACAAAGGGTGGTCTCTACCAGAGATCAAAGGCCTTGACCTCC
GAAGAACGTCTGTATCGCACCATGGTGAAATACGATATTGATGAGGATCG
AACCAAGTTACTGGAGGATCTGATGCGGGGCCCGGTGGCGGAAACCCTGG
GTATACCTTCGAATGTCATCTGGGGATCGCAGAGTGGGACCACTTTTGAC
ATCCACAGAACGGACTTCATGAAGCCAGTCATCCACATTGTGAACGAATT
GCTGGAGAAGACTCCTCTGAAGGTCGGCGTATTCTCCGGTGGCCTGGATT
TGATTTGCGCCACACCGGGCACCGTCAACTGGATAGCCAAGCTGGACTGG
AGCCGAAAGGACGAGTACCTGGCTGCTCCACGCAATGGCATCACGGTGGA
TCGCATCTTGGAGGGCTATCAAAAGACGGGCGGTAACTTTACCATGTTCT
GGATCAACCGAAGTGGTCACATGGCTCCGGCGGACAACCCTGCGGCTATG
AGTCATGTACTTCGAGAGTTTACCTCATTTGGCTAAAAGCTTTCTAGACC
AT
BS27490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-RA | 1320 | CG32483-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
| CG3344-RA | 1341 | CG3344-PA | 85..619 | 86..620 | 890 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-RA | 1382 | CG32483-RA | 1..1321 | 17..1337 | 6605 | 100 | Plus |
| CG3344-RA | 1480 | CG3344-RA | 175..709 | 86..620 | 890 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 689174..689960 | 854..68 | 3935 | 100 | Minus |
| 3L | 28110227 | 3L | 688584..688881 | 1337..1040 | 1490 | 100 | Minus |
| 3L | 28110227 | 3L | 688935..689122 | 1040..853 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 686821..687355 | 620..86 | 890 | 77.8 | Minus |
| 3L | 28110227 | 3L | 690029..690081 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:46 has no hits.
BS27490.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-09 16:48:55 Download gff for
BS27490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1318 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:19 Download gff for
BS27490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1318 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:45 Download gff for
BS27490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1318 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:45 Download gff for
BS27490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 688587..688880 | 1041..1334 | 100 | <- | Minus |
| 3L | 688935..689120 | 855..1040 | 100 | <- | Minus |
| 3L | 689174..689959 | 69..854 | 100 | <- | Minus |
| 3L | 690030..690081 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:19 Download gff for
BS27490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 688587..688880 | 1041..1334 | 100 | <- | Minus |
| arm_3L | 688935..689120 | 855..1040 | 100 | <- | Minus |
| arm_3L | 689174..689959 | 69..854 | 100 | <- | Minus |
| arm_3L | 690030..690081 | 17..68 | 100 | | Minus |
BS27490.pep Sequence
Translation from 16 to 1335
> BS27490.pep
MSIRLVALLALFAALAHGKPGYGPGEQDWGYVDVRPGAHMFYWLYYTTAN
VSSYTERPLAIWLQGGPGASSTGYGNFEELGPVDLYGDWRSWTWVKDMNV
LFIDNPVGSGFSYVDNTAFYTATNKEIALDLVELMKGFYTLHPEFEEVPL
HIFCESYGGKMAPEFALELYYAKKRGEVKSNLTSVALGDPWTSPIDSVLA
WGPFLREMGIVDHAGYNAIQEAANFTAQLVEEERWIQATYQWGNTQWEVM
KASKGVDFYNVLKETKGGLYQRSKALTSEERLYRTMVKYDIDEDRTKLLE
DLMRGPVAETLGIPSNVIWGSQSGTTFDIHRTDFMKPVIHIVNELLEKTP
LKVGVFSGGLDLICATPGTVNWIAKLDWSRKDEYLAAPRNGITVDRILEG
YQKTGGNFTMFWINRSGHMAPADNPAAMSHVLREFTSFG*
BS27490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-PA | 439 | CG32483-PA | 1..439 | 1..439 | 2361 | 100 | Plus |
| CG3344-PA | 446 | CG3344-PA | 6..446 | 5..439 | 1663 | 70.3 | Plus |
| CG31823-PA | 427 | CG31823-PA | 15..427 | 9..439 | 1122 | 49.9 | Plus |
| CG31821-PB | 427 | CG31821-PB | 5..421 | 2..438 | 911 | 44.1 | Plus |
| CG31821-PA | 427 | CG31821-PA | 5..421 | 2..438 | 911 | 44.1 | Plus |
