BS27491.complete Sequence
1253 bp assembled on 2011-09-16
GenBank Submission: KX804271
> BS27491.complete
GAAGTTATCAGTCGACATGCTTAGCTGTAGGCAACTTATTTCTCGGCTGA
GCCTTCTTCGGCAGGCGAGCACATTTGCTTGTGTGCGACTATGCCCCGAC
TATGTAGAAGTCCAGGAGGAGCAGGGCAATCTCCTGAAGTACCCCCAAGT
TTGGCTTAGGGACAACTGTCAGTGTGCCGAGTGCTTCCACGCCGCCACAA
GAGCAAGAAAAAGTCACTGGGATCGTGGCCCGCTGAATATACCAGTGTCC
CAAGTGGCCTACAACAAGGAGAGGAAACAGTTGGAGATCATCTGGCAGGA
CAAGCACAGGAGCACCTTCGATCTAGGCTGGCTGAGGGAAAGGGACTTTG
GAGAGACTGGCAGAAAGCATTACTTGGAGGAGGTCTACAAGCCACCCGCT
CAACTCTGGGGAAAAACGGAGTTCGAGGATGTGAAAAGAGAATTCCAATA
CGAGGATGTGCTGGAGCAAGATGCAGCCCTGAGAGTTTGGCTTGAGGCAC
TGGCAGTCCAAGGATTCGCCATTCTGAAAGGGGCACCCAACGACATAAAT
GTGGCTAAGAAATTGGCCGAACGAATTGGCTACATAAAACGCACCACCTA
CGGCGACGTTTTCGAGGTTAAATCCAAACCAAATGCGCGCAACTACGCCT
ATCTAATGACTCCCCTGCCGCTTCATACCGACATGCCCTACTACGAGTAC
AAGGCGGGCATCAACATCCTGCACACCCTCGTCCAGTCGGAGTCAAAGGG
TGGAGCAAATACGCTGACAGATGGCTTCAACGTGGCCTCGCAGTTGCAAA
AACTGCATCCGGAGGACTTCGAGGTGCTCAAGTCGGTGCCCGTTAACTGG
TTTGACATCGGACACGACGGCGATGACTCCAAGCCCTTCCACAGTCTCTG
GAGAGCGCCAGTAATTTGTTTGGATGTGGATGGCCGGTTCGCGAGGATCA
ACCAGAACACCACTAAGCGGGACAGCCGGTTCTCCGTTTCCCTGGCGCAG
GCCGTGTCCTGGTACAAAGCCTACGATAAGTTCCTTGAGATCGCCCAGTC
CGAGGCGGTGGAGTTCAAGACCCAAGCCGGCGATGTGTTCGTCTTCAACA
ACCTGCGAATGTTGCACGGAAGAACGGCTTACGAGGATGCGCCGGGCAAC
AAGCGTCATTTGGTGGGCGCCTACGTCGACTGGGACATTATTTACTCCAA
GCTGCGAACCCTGAAGTTCCCAAATGCCAAGGATTGAAAGCTTTCTAGAC
CAT
BS27491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14630-RA | 1221 | CG14630-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14630-RA | 1358 | CG14630-RA | 29..1249 | 17..1237 | 6105 | 100 | Plus |
| CG33082-RB | 2303 | CG33082-RB | 1606..2240 | 603..1237 | 3175 | 100 | Plus |
| CG33082-RB | 2303 | CG33082-RB | 708..1294 | 17..603 | 2935 | 100 | Plus |
| CG33082-RA | 796 | CG33082-RA | 708..796 | 17..105 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1032422..1033056 | 603..1237 | 3175 | 100 | Plus |
| X | 23542271 | X | 1031524..1032110 | 17..603 | 2935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:19 has no hits.
BS27491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 15:10:53 Download gff for
BS27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14630-RA | 20..1239 | 17..1236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:04 Download gff for
BS27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14630-RA | 20..1239 | 17..1236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:03 Download gff for
BS27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14630-RA | 29..1248 | 17..1236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:03 Download gff for
BS27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1031524..1032110 | 17..603 | 100 | -> | Plus |
| X | 1032423..1033055 | 604..1236 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:04 Download gff for
BS27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 925557..926143 | 17..603 | 100 | -> | Plus |
| arm_X | 926456..927088 | 604..1236 | 100 | | Plus |
BS27491.pep Sequence
Translation from 16 to 1236
> BS27491.pep
MLSCRQLISRLSLLRQASTFACVRLCPDYVEVQEEQGNLLKYPQVWLRDN
CQCAECFHAATRARKSHWDRGPLNIPVSQVAYNKERKQLEIIWQDKHRST
FDLGWLRERDFGETGRKHYLEEVYKPPAQLWGKTEFEDVKREFQYEDVLE
QDAALRVWLEALAVQGFAILKGAPNDINVAKKLAERIGYIKRTTYGDVFE
VKSKPNARNYAYLMTPLPLHTDMPYYEYKAGINILHTLVQSESKGGANTL
TDGFNVASQLQKLHPEDFEVLKSVPVNWFDIGHDGDDSKPFHSLWRAPVI
CLDVDGRFARINQNTTKRDSRFSVSLAQAVSWYKAYDKFLEIAQSEAVEF
KTQAGDVFVFNNLRMLHGRTAYEDAPGNKRHLVGAYVDWDIIYSKLRTLK
FPNAKD*
BS27491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14630-PA | 406 | CG14630-PA | 1..406 | 1..406 | 2170 | 100 | Plus |
| CG5321-PC | 413 | CG5321-PC | 36..405 | 30..400 | 1041 | 48.7 | Plus |
| CG5321-PB | 413 | CG5321-PB | 36..405 | 30..400 | 1041 | 48.7 | Plus |
| CG10814-PA | 402 | CG10814-PA | 28..400 | 30..405 | 959 | 46.4 | Plus |
| CG4335-PA | 364 | CG4335-PA | 3..360 | 39..399 | 302 | 26.4 | Plus |
