BS27501.complete Sequence
1307 bp assembled on 2011-09-12
GenBank Submission: KX801968
> BS27501.complete
GAAGTTATCAGTCGACATGGTGGTCATTAAGAACGAGCAGAATATCTCGG
TGCCCGAGTATCTCAACGAGCACTTCTTCACAGAGACCCTGGAGGAGGGT
TTGCGGGAGTCGAAGGTGACCCTGAAGGAGATCAATTTTGCGTGGGGCAG
CAATCCGGGGGACAACTATTGCTCGGCTATCTATCGTGTCGGAGTCTCGT
TCGCTAGATGGGCCGACGGTGGGGAATCCCCGGTGACGGAGCAGCTTTCG
CTAATTGTGAAGACCATTCCGATCACCGAAGCCACTCAGTTTCTGGAGGA
TGTCTGTGTGTTCATCAAGGAGAAGCAGACCTACACTGATGTCTTGCCGC
GATTGGATATCCTCAGCCGTGGCGACACATTCGGAGCAAAATACTATCAC
TCTGTGAAGACTCCGGTGCAAACGATCGTGTTCAGTGACCTCACGGTAGA
GGGATTCAAGGTGGCCTCGCGTGAAAAAGGCCTGGACTGGAACCACGCCT
CACTCATTCTTCAGCAACTGGGAAAGTTCCATGCCACCTCCATGGTGCTG
GCCAAGAAGGATCCCGCTATTGTGAAGCAATACACGCGTGGCATGCTCAG
CGAGGACATCCTGATGAAGAGCGACACCTTCGAGCAAATGTTCGGCGGCT
TCCTCAAGGGCCTCATCAAGAGCTCAGCGAGCTGGGCCGGCTACGAGAAG
ATTAGCAAGCACTTGCAGCGCCTTATGGACAACTTCCGGAACGTGTGTGC
GGATGCGCCCAGGCCGAGGAAGGGTGATCGCTACGTGGTGCTCAACCACG
GGGATTTGTGGACCAATAACTTCATGTACGGATACGATAACGCTTCACAG
CCGGACGTTCCCACGCGTGCCATCTTCGTGGACTTCCAACTCAGCTTCTA
TGGCAGTCCGGCCTGCGATCTGAACTTCTTCCTGAACACCAGCATCAAGC
TGCAATTGCTGCAGGAGCGCCGCGAGGAGCTCATCAAGGTGTACTATGCA
TCCTTCAAGGATGCTCTGGAGTACGCCCGCTTCGAGGACATTCCCAGCTA
TGAGGATCTGCAGTACGAGCTGCGCAGCCGCGAAACCTACGGACTTTTCG
GCATGTTCGCCTTCCTGCCCATGATCACCATGCCCAAGGAGCTGGCCCAG
GACAACAGCATTGAGAACATGCAGGACGAGGCCTTCAAGCAGCGCAAGAT
GGATGCCATCTTCTCGCAAAAGTTCCTGAACGACCACCAAAAGTGGGCTC
TGAAGCGAGCTGATTCACTTGGCGTCTTCGGGGACTACTGAAAGCTTTCT
AGACCAT
BS27501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9498-RA | 1275 | CG9498-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| CG13360-RA | 1266 | CG13360-PA | 846..930 | 868..952 | 185 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9498-RA | 1514 | CG9498-RA | 69..1350 | 12..1293 | 6395 | 99.9 | Plus |
| CG13360-RA | 1603 | CG13360-RA | 921..1005 | 868..952 | 185 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6349557..6350292 | 1293..558 | 3680 | 100 | Minus |
| 2L | 23513712 | 2L | 6350588..6350966 | 390..12 | 1880 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6350354..6350523 | 560..391 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:22 has no hits.
BS27501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:07 Download gff for
BS27501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 68..1341 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:22 Download gff for
BS27501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 74..1347 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:12 Download gff for
BS27501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 74..1347 | 17..1290 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:12 Download gff for
BS27501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6349560..6350290 | 560..1290 | 100 | <- | Minus |
| 2L | 6350355..6350523 | 391..559 | 100 | <- | Minus |
| 2L | 6350588..6350961 | 17..390 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:22 Download gff for
BS27501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6349560..6350290 | 560..1290 | 100 | <- | Minus |
| arm_2L | 6350355..6350523 | 391..559 | 100 | <- | Minus |
| arm_2L | 6350588..6350961 | 17..390 | 100 | | Minus |
BS27501.pep Sequence
Translation from 16 to 1290
> BS27501.pep
MVVIKNEQNISVPEYLNEHFFTETLEEGLRESKVTLKEINFAWGSNPGDN
YCSAIYRVGVSFARWADGGESPVTEQLSLIVKTIPITEATQFLEDVCVFI
KEKQTYTDVLPRLDILSRGDTFGAKYYHSVKTPVQTIVFSDLTVEGFKVA
SREKGLDWNHASLILQQLGKFHATSMVLAKKDPAIVKQYTRGMLSEDILM
KSDTFEQMFGGFLKGLIKSSASWAGYEKISKHLQRLMDNFRNVCADAPRP
RKGDRYVVLNHGDLWTNNFMYGYDNASQPDVPTRAIFVDFQLSFYGSPAC
DLNFFLNTSIKLQLLQERREELIKVYYASFKDALEYARFEDIPSYEDLQY
ELRSRETYGLFGMFAFLPMITMPKELAQDNSIENMQDEAFKQRKMDAIFS
QKFLNDHQKWALKRADSLGVFGDY*
BS27501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9498-PA | 424 | CG9498-PA | 1..424 | 1..424 | 2217 | 100 | Plus |
| CG13360-PA | 421 | CG13360-PA | 15..420 | 13..421 | 937 | 47.1 | Plus |
| CG9497-PB | 417 | CG9497-PB | 11..415 | 10..420 | 752 | 40.1 | Plus |
| CG9497-PA | 417 | CG9497-PA | 11..415 | 10..420 | 752 | 40.1 | Plus |
| CG7135-PA | 417 | CG7135-PA | 9..416 | 13..421 | 635 | 36.3 | Plus |
