BS27502.complete Sequence
1256 bp assembled on 2011-09-12
GenBank Submission: KX804564
> BS27502.complete
GAAGTTATCAGTCGACATGTTGACCGCCCTGCGTCGGAAAATTCGGTTCG
GAATGCAGCGCACGGTTTTAATTGCGGTCCTGCTGGCGGTGGGCATTTTC
AGCTACGCCTTTCTCAACCTCAAGTTCTGCTTCAAGTTGATGTCCCATCG
GAGCCTCAACTTGATGTGCCAGAAATTCGAAAAACATGAGTACAGCGGCT
CTCTGTGTGAGGAACTCTGTGGTTCCCAATCTTCCTTCGACAACTTTCAG
TGTCCGCTGAATGATATGAAAACTATCCTCTTTACGGCCGAAAAGAACGG
CGACTTGTATGCGGTGAAGCTGGCCCGGCACAACGATGACGAGCTGAGCT
GGACGAACAACAAGGGGGAGTCGATATACCCCAAGCTCGAGGAGTTCCAC
GAGATCGTGAAGCTGCACATCATTCTGGCGTACAATGTCACCCTGGATGA
TAATATGATCCGCGCTCTGGTCAACCAGGAAATAGCCGATGATAACTCGC
AGCAGATGGTCAGTTTTTGGCGGCTCTTCAAGGACAACAACTACATGATG
GGCAAACTTTTCGACGAGGAATCCATCTTTCCGGCTGTGCTGGGCTCCTG
TGGACCCTACTACGCCACTGAGGGACTGGAGATTGTGCAGTCCAACCCCA
GCATAATGCAGTATCTGGCCTCCAATCGCGTGCAGCGGCTGAAGCATGCT
CTCAATATTATGGAGTACATTTTCCGACTGGACGAAATGAAGCCGGAGCC
GCTGAAGATGTGCAAGATGCAGGTGAATCGCTTCGGAACCGCCTCTGAGC
GAAGACTGAAGTACCAGAGTGCCGAGCACGTCTATGTGGAGAGCCAGCTG
GACAAGCGATTGTCCAGGGGCGTCAAGTGCCACGCCCACCAGGACTGCCA
CTTCCACTCCTGCCGAGGATTGTGTGACGAGGAGAAGCAATCCTGCACGC
ACATTCAGCAGAACAACAACTTCCAGATTTTCTGCGAGCACATCCTACTG
GGCGGAGGCACATTTCAGCCCGGCCTCCTCAGCGGAGTGCGCCTCTCCAA
GGCGCTCCAGAAGCTGGTCAAGATGTGCGTCCAGCCGCCCAAGGAGCATC
AAGTGCCAGGACGCCAGTGGGCACCCAACACGCAGCTCGCCCTGAGGCTC
TACAACGAGCTGAAGCAACTGCATCAGGCTGCAACAGCATCCGCAGGATC
CGTGATTCCCGACGAGGGACAGGCACGTCGGGGAGTCTAAAAGCTTTCTA
GACCAT
BS27502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12038-RA | 1224 | CG12038-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12038-RA | 1456 | CG12038-RA | 79..1304 | 17..1242 | 6130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 994976..995551 | 667..1242 | 2880 | 100 | Plus |
| 3L | 28110227 | 3L | 994707..994917 | 457..667 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 994276..994429 | 166..319 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 994061..994210 | 17..166 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 994501..994640 | 318..457 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:49 has no hits.
BS27502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:08 Download gff for
BS27502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 79..1295 | 22..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:37 Download gff for
BS27502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 84..1300 | 22..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:24 Download gff for
BS27502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 84..1300 | 22..1238 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:24 Download gff for
BS27502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 994066..994210 | 22..166 | 100 | -> | Plus |
| 3L | 994277..994429 | 167..319 | 100 | -> | Plus |
| 3L | 994503..994640 | 320..457 | 100 | -> | Plus |
| 3L | 994708..994916 | 458..666 | 100 | -> | Plus |
| 3L | 994976..995547 | 667..1238 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:37 Download gff for
BS27502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 994066..994210 | 22..166 | 100 | -> | Plus |
| arm_3L | 994277..994429 | 167..319 | 100 | -> | Plus |
| arm_3L | 994503..994640 | 320..457 | 100 | -> | Plus |
| arm_3L | 994708..994916 | 458..666 | 100 | -> | Plus |
| arm_3L | 994976..995547 | 667..1238 | 100 | | Plus |
BS27502.pep Sequence
Translation from 16 to 1239
> BS27502.pep
MLTALRRKIRFGMQRTVLIAVLLAVGIFSYAFLNLKFCFKLMSHRSLNLM
CQKFEKHEYSGSLCEELCGSQSSFDNFQCPLNDMKTILFTAEKNGDLYAV
KLARHNDDELSWTNNKGESIYPKLEEFHEIVKLHIILAYNVTLDDNMIRA
LVNQEIADDNSQQMVSFWRLFKDNNYMMGKLFDEESIFPAVLGSCGPYYA
TEGLEIVQSNPSIMQYLASNRVQRLKHALNIMEYIFRLDEMKPEPLKMCK
MQVNRFGTASERRLKYQSAEHVYVESQLDKRLSRGVKCHAHQDCHFHSCR
GLCDEEKQSCTHIQQNNNFQIFCEHILLGGGTFQPGLLSGVRLSKALQKL
VKMCVQPPKEHQVPGRQWAPNTQLALRLYNELKQLHQAATASAGSVIPDE
GQARRGV*
BS27502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12038-PA | 407 | CG12038-PA | 1..407 | 1..407 | 2148 | 100 | Plus |
