BS27505.complete Sequence
2636 bp assembled on 2011-10-14
GenBank Submission: KX804747
> BS27505.complete
GAAGTTATCAGTCGACATGCAGAACGGAAAACCGAGATCTTCGGCCAGGC
CGTCGTTCCACCGCCGTCCCAAAGACGGAGTGGCCAACACCACCACTGAT
AACGCTGCTGTCAAGCCGGAGGCCTTGGAGAGCTATACGGGCAACGACGA
CAACGCCTGCGTGGTGTGCTTCAAAAACGTGGAAATTTTCTCCATCGGCG
ACTGTGATCATCCCGTGTGCTACGAGTGCTCCACTCGGATGAGGGTTCTC
TGCCAGCAGAACGAGTGCCCCATCTGCCGCCACGTCCTGTCCAAGGTTTT
GTTCACACTGGACAAGCTGCCCTATCGCGAACTGGAGGCAAATAACCGCT
CTGATTTATACAGCAAGAAGTACCGCATCGGCTTCTGCACCGCAGAGATA
AGACAGCAATTCTTCAAATTGCTCGACCATCCCTGCCCGAAATGCGATGC
ACCTCCATACCGCACGTTCGAGGGCCTTCGCAACCATGTTCGCAGCGAGC
ATAAACTTCTGTACTGTGACCTATGCGTCGAGACCCTCAATATCTTCACC
TTCGAACGGAGGTGCTACACTCAGGCGGAGCTGCAGCTACACAACACCAA
GGGCGATCCGGACAATCGGTCGCATCGCGGTCATCCGTTGTGCGAATACT
GCAATAAACGCTATGTGGACCGTGATGAGTTGTTCCGTCATTTGCGCCGC
GAGCACTACTTCTGCCACTTTTGCGACGCCGATGGTTGCAATGAGTTCTA
CAATGACTATGCGGATCTGGCGGAACATTTCCGGGCGGAGCACTTTCTCT
GCGAGGAGGGTAAGTGCGCCACCGAGCAGTTTGTCGGCGCATTCCGCAAC
GAAATCGAGTACAAGGCGCACGTGGCCAACGTGCACGGCAAGTCGCTCAA
CAAGCAGCAGGCCAAGCAGACGCGCACCTTGCAGGTGGAGATCACTTTGG
GGCCTCGTGGCCGTAGTGGGCAGACGGAGCAGGGCATAACCAGCGTGAGA
ACCAGGAATGACGAGCACAACGACTACCAGAACGATTTGCCTTCGATCAC
CCAGCGCCATGTGAGCATTGATGCTGGCAACGAGGAACAGTTTCCCACAT
TGAGAGGCGCTTCCACAGCTCCCAGCGTATCCTTGGTGAGACCGCCACCG
CCCTCGATGCGCAATCTTAGTGGAACTTCTGGTCTTGCTCGGACCAAAGA
AAACTTCCCGGCTCTGGGAGGAGGAAATGGAGGTGGTGTTACTGGGCCCA
CTAGCAGCAGCATTGCCGCCCGGGCTGCTCAATCGCAGCACCCCGTGGCA
GCTGTCTTTAAGAAACCCACAAGCGCGGCAGGTTCTGGCAGTCGAAGTGG
GCCTCCCGGTAACGGAATGCTCCTGCATGTGTCAAATCGATCAGCAGCCG
TGCCCAAAAAGGCAGCCACGCCGCAGGTAGACTTTCCTGCATTACCGGGT
AAGGGGAACAAGAAGAATCTGCGCAACCTGGAGGAGGATATGCTGCCTAG
CGGATCGCCAGTGCCGATGGCGAACATCTCCGCTAAGCATCGGTCTCTAG
CCGATGACTACGTGTCAGTGGCTAGCCCGAGCACCTTTCAAAAGCTTCAA
ATGGTACAAAAGGAGGAGGACGAGGCCAAAGCGCGCCAGGAGGCTTTGAA
GAAGAGTGCTCCCAAACTCACTGCGGCGGAATTCCCTAGCCTCGGACCGA
GTGCCAGCGCCAGCTCAAGCAGGACGACTGCTCCAAAGCCCAGCAGTGGA
TCTCCTTCATTGAACTGGTCGAAACCAGCTAATGAGAAGAAGCAGCGTGA
GCTGGAGAATCGCAAGGCCAAAGTGGCGCCGGCCCCGGTTCTGCCGAGTC
CAACATCGAAACCTGCTCCCAAGGCAAGCAACAACAATGTTCAAGAGCAG
CAGGCAAATAAAAAGGATAAAAAGCAGAAGGATAAAAAGAGCAACCAGGA
GAATCAGCCTAAGACGGCCAAACCGAAGGAGAGAAATAATAACAACGAAC
AAAAAACCAATGGGGCTCCGTCTACGCCAATACGTGCTCCTCCCGGCTTA
AAACCTGGCGGACCGCTAAAGCCACCACCAGGATTCGTGTCCAACGTGAC
TGTTAACTCGGTGGCCAAGCTGCCCAACAATCTCACGTTCACCAATTCGC
TGGGCGAGTCGTATGACATTGTACCCAGCCCCTATACGTACACCGATCCA
CCAGATACCGAGGTCAGGAATCAGAAATTGGTTGATGAGGTTATGTCCCT
GCTCAAGACCCCAGAGGCGTTGAACGAATTCCGCTTGCTTTCGTCTAAGT
TCCGCGACGGATCCTGTTCTGGCCAAGCCTATTACGAGCACTGCCAGTGC
GCCATGTTGAGCTCATTTTACAACCTGTTCCCGGAGCTGCTGGCCATGCT
GCCGGACATAAGTAAGCAACAGGAACTTTACCTAGTGCACAAACAACACC
TGAACAGCTTGCCGCCCGCCGAGCGCAAATCCGTGCCCGCGCTTGAAGTT
TGCAAGGTGTGCAAACAGATCCTCATCACCGCCGACTTAAAGAGCCACCA
GCAGGCGCATGAGCTGACCAAAAACTTCCCCGTACTCGGAAGCTCAGCCT
CTAACACGCACCGCAATTGAAAGCTTTCTAGACCAT
BS27505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11414-RA | 2604 | CG11414-PA | 1..2604 | 17..2620 | 13020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11414-RA | 3139 | CG11414-RA | 254..2857 | 17..2620 | 13020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24563024..24564245 | 1003..2224 | 6110 | 100 | Plus |
| 2R | 25286936 | 2R | 24562406..24562970 | 442..1006 | 2825 | 100 | Plus |
| 2R | 25286936 | 2R | 24561860..24562140 | 17..297 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 24564310..24564511 | 2222..2423 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 24564576..24564776 | 2420..2620 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 24562195..24562342 | 294..441 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:29 has no hits.
BS27505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:56 Download gff for
BS27505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 252..2854 | 17..2619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:25 Download gff for
BS27505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 254..2856 | 17..2619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:40 Download gff for
BS27505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 254..2856 | 17..2619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:40 Download gff for
BS27505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24561860..24562138 | 17..295 | 100 | -> | Plus |
| 2R | 24562197..24562342 | 296..441 | 100 | -> | Plus |
| 2R | 24562406..24562969 | 442..1005 | 100 | -> | Plus |
| 2R | 24563027..24564245 | 1006..2224 | 100 | -> | Plus |
| 2R | 24564313..24564510 | 2225..2422 | 100 | -> | Plus |
| 2R | 24564579..24564775 | 2423..2619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:25 Download gff for
BS27505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20451836..20452033 | 2225..2422 | 100 | -> | Plus |
| arm_2R | 20452102..20452298 | 2423..2619 | 100 | | Plus |
| arm_2R | 20449383..20449661 | 17..295 | 100 | -> | Plus |
| arm_2R | 20449720..20449865 | 296..441 | 100 | -> | Plus |
| arm_2R | 20449929..20450492 | 442..1005 | 100 | -> | Plus |
| arm_2R | 20450550..20451768 | 1006..2224 | 100 | -> | Plus |
BS27505.pep Sequence
Translation from 16 to 2619
> BS27505.pep
MQNGKPRSSARPSFHRRPKDGVANTTTDNAAVKPEALESYTGNDDNACVV
CFKNVEIFSIGDCDHPVCYECSTRMRVLCQQNECPICRHVLSKVLFTLDK
LPYRELEANNRSDLYSKKYRIGFCTAEIRQQFFKLLDHPCPKCDAPPYRT
FEGLRNHVRSEHKLLYCDLCVETLNIFTFERRCYTQAELQLHNTKGDPDN
RSHRGHPLCEYCNKRYVDRDELFRHLRREHYFCHFCDADGCNEFYNDYAD
LAEHFRAEHFLCEEGKCATEQFVGAFRNEIEYKAHVANVHGKSLNKQQAK
QTRTLQVEITLGPRGRSGQTEQGITSVRTRNDEHNDYQNDLPSITQRHVS
IDAGNEEQFPTLRGASTAPSVSLVRPPPPSMRNLSGTSGLARTKENFPAL
GGGNGGGVTGPTSSSIAARAAQSQHPVAAVFKKPTSAAGSGSRSGPPGNG
MLLHVSNRSAAVPKKAATPQVDFPALPGKGNKKNLRNLEEDMLPSGSPVP
MANISAKHRSLADDYVSVASPSTFQKLQMVQKEEDEAKARQEALKKSAPK
LTAAEFPSLGPSASASSSRTTAPKPSSGSPSLNWSKPANEKKQRELENRK
AKVAPAPVLPSPTSKPAPKASNNNVQEQQANKKDKKQKDKKSNQENQPKT
AKPKERNNNNEQKTNGAPSTPIRAPPGLKPGGPLKPPPGFVSNVTVNSVA
KLPNNLTFTNSLGESYDIVPSPYTYTDPPDTEVRNQKLVDEVMSLLKTPE
ALNEFRLLSSKFRDGSCSGQAYYEHCQCAMLSSFYNLFPELLAMLPDISK
QQELYLVHKQHLNSLPPAERKSVPALEVCKVCKQILITADLKSHQQAHEL
TKNFPVLGSSASNTHRN*
BS27505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11414-PA | 867 | CG11414-PA | 1..867 | 1..867 | 4607 | 100 | Plus |
