BS27506.complete Sequence
3797 bp assembled on 2011-10-14
GenBank Submission: KX803900
> BS27506.complete
GAAGTTATCAGTCGACATGACTACGAAATTCTCAATCAATGGGCTGCCCT
ATGCAGTGAATCTAACTAACCTTCCGCCGGATATCACTCTGAACACCTTT
ATCCGCGAGCATGCCCAACTCACGGCCACCAAATTCATGTGCCAGGAGGG
AGGATGTGGCGCCTGCATCTGCGTGGTGCGCGATGGAAAGCGCAGCTGGG
CTGTCAATTCGTGCCTCACTCTGCTGAATACCTGCGCCCAGCTGGAGATC
GTGACCGCCGAGGGATTGGGCAATCAGCGCACCGGCTACAATCCCATCCA
GAAGCGTCTGGCCAAAATGAATGGCACCCAGTGCGGCTTTTGCTCGCCGG
GATTCGTGATGAACATGTATGGGTTGATGGAGCAGAACGAAGGCAAGGTC
ACCATGGCGGAGGTGGAGAACTCCTTTGGTGGGAATATCTGCCGTTGCAC
TGGATATCGTCCAATTCTGGATGCCATGAAGTCCTTTGCGGTGGACAGTA
ACATTGCGATTCCCGCCGAGTGCGGGGACATTGAGGATCTAAAACCCCGG
AACTGCCCAAAGACCGGACAAGCCTGCAGTGGTAGCTGCCTTCCGTCCAC
TTTGGTCTACGAAGATGGTGTTCAGTGGCACTGGCCCAAGAGTCTAAGCG
AACTGTTCGACGCCCTAGACAAGGTGAAGGACTCGGAGGAGTTCATGTTG
GTGGCTGGCAACACGGCTCATGGGGTCTACCGAAGGTCGACGGATATCAA
GCACTTCATCGACGTCCAGGGAGTGGAGGAACTGCATCAGCACAGCTCTG
AGGGACAGCAATTGAAGCTAGGAGCTAATCTCAGTCTCACCCAGACCATG
GAAATCATTCGTACTACTTCAAAGCAGCCAGGATTTGAGTACTTGGACGT
TCTGTGGAACCACATTGATTTGATTGCCAATGTTCCAGTGCGAAACTCTG
GAACTTTGGCTGGCAATATTTCGATCAAAAAACAAAATCCCGAGTTTCCT
TCGGATATTTTCATATCCTTTGAGGCCCTGAATGTTAAAGTGGTAGCTTT
GAAAAACGCTGCTGATGAAAAGGAAATGTCCCTTGCAGAATATCTGGGCA
CAAATGATAAAAAGCTGGTGCTCAAAACTTTTGTTCTTCCTGCCTACCCG
AAGGACAAATACATTTATGAGTCCTATAAGATCATGCCTCGTGCCCAAAA
TGCCCATGCTTATGTCAACGCCGCTTTTCTCCTAGAATTGGAAGCCGACA
ACAAGGTGAAATCTGCTCGAATTTGCTTCGGTGGAATCCGTCCAGATTTT
ATCCATGCCTCAGCTATTGAGAAACTGCTGGTGGGACAGAATCCCTACGA
ATCAAGTCTGGTGGAGCAGACATTCACAAAACTGGAAGATCTGATTAAGC
CTGATGAAGTGCTGCCGGATGCCAGTCCCGCTTACCGTTCCAAGTTGGCA
TGCGGACTATTCTACAAGTTCCTTCTGAAGCACGCACCCGTAGCTGAGGT
TGGCGAAAAATTCCGAAGCGGAGGGCAGATCCTGCAGCGGCCTCTCTCCT
CTGGATTGCAAGTTTTTCAGACCCAGAAGAAGAACTATCCCGTCACCCAA
GCGGTGGAAAAAGTCGAGGGCATGATACAGTGCTCTGGAGAGGCCACCTA
CATGAACGATGTCTTGACCACTTCTAATACGCTGCACTGCGCCTTCGTGG
GCGCCACCAAAGTGGGCTCCACCATTGATTCTATCGACGCCTCCGAAGCC
CTCAAGCAACCTGGAGTGATCGCCTTTTACAGTGCCAAAGACATTCCCGG
CACTAACACTTTCTGTGAGCCCAGTTTTGGTTTCGAGGTGGAGGAGATCT
TCTGCTCGGGATTGGTGCGCCACTCAGAGCAGCCAGCTGGTGTAATCGTT
GCTTTAACTGCTGACCAGGCACACAGAGCCGCGAAGCTGGTCAGGATCAG
CTACAGCAATCCCAGTTCCGACTTCAAGCTGCAGCCGAGCTTAGGAGATG
TATTCGCATCTCCAACTCCGGATTCCTCTCGCATAGTGCCAGCATCGAAA
TCGACATCCAAGAAGATCAAGTTCTCGGAACAGCCGGACAAGGAAGTGAG
GGGCATCTTCCAGATGGGTCTGCAGTATCACTTTACCATGGAGCCCCAGA
CAACTGTGGCCATTCCCTTTGAGGATGGTCTCAAGATCTTTTCGGCCACT
CAGTGGATGGATCAAACCCAGTCTGTAATTGCCCATATGCTGCAGGTGAA
GGCCAAGGATGTTCAACTACAGGTTCGTAGATTGGGAGGTGGCTATGGAT
CAAAGATCACCCGAGGTAACCAGGTGGCCTGTGCAGCTTCATTGGTTGCT
TACAAGCTAAATCGTCCCGTTCGCTTTGTCCAATCCCTGGAGTCCATGAT
GGATTGCAATGGCAAGCGGTGGGCTTGTCGCTCCGACTACAAGTGTCACA
TTAAGGATAATGGCAAGATTGTGGGCTTGACGAATGATTTTTATGAGGAC
GCTGGCTGGAGTCCGAATGAAAGTCCCATTGAGGGTCATTCGACCTTCAC
GGCCGTCAATTGTTATGATTTGAACGGAGATAACTTTAAAAACAACGGAA
ATGCGGTGCTAACAGATGCGCCCAGTTCCACTTGGTGTCGTGCTCCGGGA
TCGGTGGAGGGTATTGCCATGATTGAGAACATCATCGAGCACGTTGCCTT
CGAAGTTCAGAAAGATCCGGCTGAAGTTCGTCTTGCAAACATTGCGGCGG
GTAATAAGATATCCGAGTTGCTTCCCCAGTTCCTTGAGTCTAGGGAATAT
GCCCAGAGGAAAAAAGAAATTGAGTCCCATAATGCCAAGAATCGTTGGAC
GAAACGAGGTCTCGGATTGGCGGTAATGGACTACCCCATTTTCTATTTTG
GCCAGTACCCGGCTACAGTTGCCATCTATCATGTGGATGGCACTGTTGTG
GTTACCCATGGAGGCATTGAAATGGGACAGGGTATGAACACTAAGGTGGC
TCAAGTGGCTGCCTACACCCTTGGCATCGATTTGAGCTTCATCAAGGTGG
AGTCCTCCGACACCATCAATGGAGCCAATTCGATGGTCACCGGAGGAGCT
GTGGGCAGCGAAAGTCTCTGCTATGCAGTTCGGAAGGCCTGTGAGACCTT
GAACAGTCGCTTGGAGCCGGTGAAGAAGAAGGATGCCAGTTGGATTGAGA
CAGTTGAAGCTGCCTATGGCAAATCGATCAACCTGATTGCCTCTGATCAC
TACAAGAAGGGCGATATGCAAAACTATCATATCTACGGTCTGGCCCTAAC
CGAAGTAGAGTTGGATGTGCTAACTGGAAACAGTCAGATCAAGCGCGTGG
ATATACTGGAGGATGCCGGAGAGAGCCTGAGTCCCTGGATAGACATCGGT
CAGATTGAGGGTGCCTTTGTCATGTGCCTGGGCTACTGGATGAGTGAGCA
GCTGGTGTACGACCGGGAAACAGGTCGCCTCCTCACCAACCGCACCTGGA
ACTACAAGCCGCCGGGTGCCAAGGACATTCCCATTGATTTTCGCATTGAG
CTGATTCAGAAACCCAATCCCTCTGGGGCGGGCTTCATGCGGTCGAAGGC
CACTGGAGAACCACCCTGTTGTTTGGCTGTGAGTGTGGTTTTCGCCCTGC
GACAGGCCCTGGATTCAGCCCGCCATGATGCAGGACTACCGCGGGAGTGG
GTGCGTCTGGGTGCACCCACAACTCCGGAAACTCTGGTGGTCAATGCAGG
ACATGAAGCAGCCAGTTTTAGGCTTAAGTAAAAGCTTTCTAGACCAT
BS27506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX3-RA | 3765 | CG6045-PA | 1..3765 | 17..3781 | 18825 | 100 | Plus |
| AOX4-RA | 3771 | CG18516-PA | 34..3743 | 50..3753 | 5450 | 76.5 | Plus |
| AOX1-RA | 3822 | CG18522-PA | 192..579 | 190..577 | 710 | 78.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX3-RA | 4163 | CG6045-RA | 277..4042 | 17..3782 | 18830 | 100 | Plus |
| AOX4-RA | 3832 | CG18516-RA | 95..3804 | 50..3753 | 5450 | 76.5 | Plus |
| AOX1-RA | 4228 | CG18522-RA | 409..796 | 190..577 | 710 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15544495..15545590 | 2274..1179 | 5480 | 100 | Minus |
| 3R | 32079331 | 3R | 15542869..15543670 | 3782..2981 | 4010 | 100 | Minus |
| 3R | 32079331 | 3R | 15545935..15546670 | 946..211 | 3680 | 100 | Minus |
| 3R | 32079331 | 3R | 15543726..15544440 | 2984..2270 | 3575 | 100 | Minus |
| 3R | 32079331 | 3R | 15550251..15551346 | 2274..1179 | 1760 | 77.4 | Minus |
| 3R | 32079331 | 3R | 15548656..15549428 | 3753..2981 | 1240 | 77.4 | Minus |
| 3R | 32079331 | 3R | 15545644..15545877 | 1180..947 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 15551689..15552429 | 945..211 | 1030 | 76.2 | Minus |
| 3R | 32079331 | 3R | 15549485..15550199 | 2984..2270 | 980 | 75.8 | Minus |
| 3R | 32079331 | 3R | 15546729..15546886 | 211..54 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 15536018..15536405 | 577..190 | 710 | 78.9 | Minus |
| 3R | 32079331 | 3R | 15541724..15542050 | 537..211 | 510 | 77.1 | Minus |
| 3R | 32079331 | 3R | 15552509..15552639 | 199..69 | 295 | 81.7 | Minus |
| 3R | 32079331 | 3R | 15538057..15538259 | 3561..3359 | 280 | 75.9 | Minus |
| 3R | 32079331 | 3R | 15534923..15535064 | 1320..1179 | 275 | 79.6 | Minus |
| 3R | 32079331 | 3R | 15533023..15533112 | 3147..3058 | 240 | 84.4 | Minus |
| 3R | 32079331 | 3R | 15536441..15536543 | 172..70 | 230 | 81.6 | Minus |
| 3R | 32079331 | 3R | 15551531..15551638 | 1054..947 | 225 | 80.6 | Minus |
| 3R | 32079331 | 3R | 15547355..15547394 | 56..17 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 15533525..15533593 | 2703..2635 | 195 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:37:03 has no hits.
BS27506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:57 Download gff for
BS27506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6045-RA | 276..4038 | 17..3779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:37 Download gff for
BS27506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6045-RA | 277..4039 | 17..3779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:54 Download gff for
BS27506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AOX3-RA | 277..4039 | 17..3779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:54 Download gff for
BS27506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15546729..15546883 | 57..211 | 100 | <- | Minus |
| 3R | 15547355..15547394 | 17..56 | 100 | | Minus |
| 3R | 15542872..15543669 | 2982..3779 | 100 | <- | Minus |
| 3R | 15543729..15544437 | 2273..2981 | 100 | <- | Minus |
| 3R | 15544497..15545588 | 1181..2272 | 100 | <- | Minus |
| 3R | 15545644..15545877 | 947..1180 | 100 | <- | Minus |
| 3R | 15545935..15546669 | 212..946 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:37 Download gff for
BS27506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11372451..11372605 | 57..211 | 100 | <- | Minus |
| arm_3R | 11373077..11373116 | 17..56 | 100 | | Minus |
| arm_3R | 11368594..11369391 | 2982..3779 | 100 | <- | Minus |
| arm_3R | 11369451..11370159 | 2273..2981 | 100 | <- | Minus |
| arm_3R | 11370219..11371310 | 1181..2272 | 100 | <- | Minus |
| arm_3R | 11371366..11371599 | 947..1180 | 100 | <- | Minus |
| arm_3R | 11371657..11372391 | 212..946 | 100 | <- | Minus |
BS27506.pep Sequence
Translation from 16 to 3780
> BS27506.pep
MTTKFSINGLPYAVNLTNLPPDITLNTFIREHAQLTATKFMCQEGGCGAC
ICVVRDGKRSWAVNSCLTLLNTCAQLEIVTAEGLGNQRTGYNPIQKRLAK
MNGTQCGFCSPGFVMNMYGLMEQNEGKVTMAEVENSFGGNICRCTGYRPI
LDAMKSFAVDSNIAIPAECGDIEDLKPRNCPKTGQACSGSCLPSTLVYED
GVQWHWPKSLSELFDALDKVKDSEEFMLVAGNTAHGVYRRSTDIKHFIDV
QGVEELHQHSSEGQQLKLGANLSLTQTMEIIRTTSKQPGFEYLDVLWNHI
DLIANVPVRNSGTLAGNISIKKQNPEFPSDIFISFEALNVKVVALKNAAD
EKEMSLAEYLGTNDKKLVLKTFVLPAYPKDKYIYESYKIMPRAQNAHAYV
NAAFLLELEADNKVKSARICFGGIRPDFIHASAIEKLLVGQNPYESSLVE
QTFTKLEDLIKPDEVLPDASPAYRSKLACGLFYKFLLKHAPVAEVGEKFR
SGGQILQRPLSSGLQVFQTQKKNYPVTQAVEKVEGMIQCSGEATYMNDVL
TTSNTLHCAFVGATKVGSTIDSIDASEALKQPGVIAFYSAKDIPGTNTFC
EPSFGFEVEEIFCSGLVRHSEQPAGVIVALTADQAHRAAKLVRISYSNPS
SDFKLQPSLGDVFASPTPDSSRIVPASKSTSKKIKFSEQPDKEVRGIFQM
GLQYHFTMEPQTTVAIPFEDGLKIFSATQWMDQTQSVIAHMLQVKAKDVQ
LQVRRLGGGYGSKITRGNQVACAASLVAYKLNRPVRFVQSLESMMDCNGK
RWACRSDYKCHIKDNGKIVGLTNDFYEDAGWSPNESPIEGHSTFTAVNCY
DLNGDNFKNNGNAVLTDAPSSTWCRAPGSVEGIAMIENIIEHVAFEVQKD
PAEVRLANIAAGNKISELLPQFLESREYAQRKKEIESHNAKNRWTKRGLG
LAVMDYPIFYFGQYPATVAIYHVDGTVVVTHGGIEMGQGMNTKVAQVAAY
TLGIDLSFIKVESSDTINGANSMVTGGAVGSESLCYAVRKACETLNSRLE
PVKKKDASWIETVEAAYGKSINLIASDHYKKGDMQNYHIYGLALTEVELD
VLTGNSQIKRVDILEDAGESLSPWIDIGQIEGAFVMCLGYWMSEQLVYDR
ETGRLLTNRTWNYKPPGAKDIPIDFRIELIQKPNPSGAGFMRSKATGEPP
CCLAVSVVFALRQALDSARHDAGLPREWVRLGAPTTPETLVVNAGHEAAS
FRLK*
BS27506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX3-PA | 1254 | CG6045-PA | 1..1254 | 1..1254 | 6559 | 100 | Plus |
| AOX4-PA | 1256 | CG18516-PA | 1..1256 | 1..1254 | 5326 | 77.9 | Plus |
| AOX1-PA | 1273 | CG18522-PA | 1..1272 | 1..1253 | 3884 | 59.5 | Plus |
| AOX2-PC | 1264 | CG18519-PC | 1..1264 | 1..1253 | 3884 | 58.7 | Plus |
| ry-PA | 1335 | CG7642-PA | 8..1304 | 5..1236 | 1323 | 31.4 | Plus |
