BS27509.complete Sequence
1070 bp assembled on 2011-09-12
GenBank Submission: KX801402
> BS27509.complete
GAAGTTATCAGTCGACATGCCGCCCGTGCAAGTCCAGGCAGCGAACATGT
CGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGACT
GAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCGT
ATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCG
AGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTGC
TGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGTC
AGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAGC
TGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCCTTGTGTCACGAG
TGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAAA
ATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTGT
ACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTCC
ACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGAA
CGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGTG
GTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAAG
CACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTCTT
GGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCACT
ATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTATTGGA
GGCGATGTTTTCACTGCCTTGAACAAGGCCTGGTGTGTGCACCACTTTGC
GTGCTCCGTGTGCGACACGAAGATGACACAAAAATCGAAATTCTACGAGT
ACGACGAGAAGCCGGTGTGCAAAAAGTGCTATGACCGATTTCCAAACGAA
CTCAGACGACGTCTGCGCACCGCCCACGAGATGACAATGAAAAAGAACAC
CTAAAAGCTTTCTAGACCAT
BS27509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RB | 1038 | CG7954-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| stck-RC | 1047 | CG7954-PC | 24..1047 | 31..1054 | 5120 | 100 | Plus |
| stck-RD | 1008 | CG7954-PD | 1..1008 | 47..1054 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RD | 1500 | CG7954-RD | 225..1262 | 17..1054 | 5190 | 100 | Plus |
| stck-RB | 1388 | CG7954-RB | 113..1150 | 17..1054 | 5190 | 100 | Plus |
| stck-RC | 1335 | CG7954-RC | 78..1101 | 31..1054 | 5120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 151..456 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 598..857 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359726 | 857..1054 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 457..598 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 31..150 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:13 has no hits.
BS27509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:08 Download gff for
BS27509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 109..1131 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:49 Download gff for
BS27509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 113..1135 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:33 Download gff for
BS27509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 113..1135 | 17..1039 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:33 Download gff for
BS27509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8358471..8358590 | 31..150 | 100 | -> | Plus |
| 3R | 8358649..8358954 | 151..456 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 457..598 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 599..857 | 100 | -> | Plus |
| 3R | 8359530..8359711 | 858..1039 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:49 Download gff for
BS27509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184731..4184872 | 457..598 | 100 | -> | Plus |
| arm_3R | 4184193..4184312 | 31..150 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 151..456 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 599..857 | 100 | -> | Plus |
| arm_3R | 4185252..4185433 | 858..1039 | 100 | | Plus |
BS27509.pep Sequence
Translation from 16 to 1053
> BS27509.pep
MPPVQVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCF
RPFQDGIFYEFEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHP
QCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCHGLI
DEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCL
RCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHY
EKRGLAYCETHYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCD
TKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNT*
BS27509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-PB | 345 | CG7954-PB | 1..345 | 1..345 | 1971 | 100 | Plus |
| stck-PC | 348 | CG7954-PC | 9..348 | 6..345 | 1943 | 100 | Plus |
| stck-PD | 335 | CG7954-PD | 1..335 | 11..345 | 1920 | 100 | Plus |
| stck-PA | 335 | CG7954-PA | 1..335 | 11..345 | 1920 | 100 | Plus |
| Pax-PB | 556 | CG31794-PB | 322..553 | 78..324 | 400 | 32.7 | Plus |
