BS27511.complete Sequence
1178 bp assembled on 2011-09-12
GenBank Submission: KX804277
> BS27511.complete
GAAGTTATCAGTCGACATGGTGTCTGCGGCGATTCGACTTGGACTGCTCT
TGTGCATCTTGCCCCAGCTGGTCATCAGCCAGAGCAGCTGCGTCACGCCG
GCCCAAGCAGCCGGTCAGTGCATCCGATACCAGGAGTGCCCCTTCGTGCA
GAAGATTCTCGGGATCTACGGTCGGAATATACCACGGAAAATCCACAACC
AAATTAGTGAGATGCAGTGCAGGAGCACTACGAATACGAGGGACTTCCAT
CTTTGTTGCCCCAACGAGGCACCTCCTCAATCCAATCAGGAGTCGCAGAG
GAAGGTCGTGCGATCGGAGGGCGGAAATCTGAACCGGTATGATCGCCAGG
GTCTGCAGCTGCTGAACTCGGTGACCAACTGCGGCAACAAGGGCAATCCC
AAGGTGAGCGGTGGAAAGACGGCCAGGCCAGGCGACTTTCCCTGGGTGGC
CCTGCTCAAGTACAAGATCAACGATCCGCGTCCATTCCGCTGCGGCGGCA
GCCTCATCAGCGAACGCCACATCCTGACCGCCGCCCACTGCATCATCGAT
CAGCCCGAAGTAATCGCGGTGCGCCTGGGCGAGCATGACCTGGAATCGGA
GGAGGACTGCCACTATTTGGGCGGTACGAACCGCGTATGCATTCCGCCCT
ACGAGGAGTACGGCATAGAGCAGATACGAGTACATCCCAACTACGTGCAT
GGCAAGATCAGCCATGACGTTGCCATCATCAAGCTGGATCGCGTGGTCAA
GGAAAAATCGCATATTAAGCCCGTTTGCCTGCCAATCGACCAGAAGTCAC
AGGAACTGGACTTCGATCAGAGCTTCTTCGTCGCCGGCTGGGGCGGCACC
GAGAAGGAGACTGTGGCCACCAAGCTCCAACAGGCGCTGATCACCAGGAA
GAGCCTGAACGAGTGTCGCCAGTACTACAACAAGGGTGAGGTGAGCGACA
ACCACATCTGCGCCACAGGAACTGGGATCAAGCACACTTGCCAGGGAGAT
TCCGGCGGACCGGTGTTCTTCAAGCATCGCTTCAAGAACACCTACCGAGT
GGTCCAGTACGGTGTGGTCTCCTTCGGCGGACGGCTATGCGGACAGAACC
AGCCAGGAGTCTTCGCCAGTGTCATCGACATGCTGCCCTGGATCACGCAG
AACCTTCAGTAGAAGCTTTCTAGACCAT
BS27511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5909-RA | 1146 | CG5909-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5909-RA | 1455 | CG5909-RA | 168..1323 | 7..1162 | 5735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27162179..27162779 | 562..1162 | 3005 | 100 | Plus |
| 3R | 32079331 | 3R | 27161739..27162059 | 241..561 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 27161455..27161616 | 81..242 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 27161325..27161398 | 7..80 | 325 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:56 has no hits.
BS27511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:06 Download gff for
BS27511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 178..1323 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:09 Download gff for
BS27511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 178..1323 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:01 Download gff for
BS27511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 178..1323 | 17..1162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:01 Download gff for
BS27511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27161740..27162059 | 242..561 | 100 | -> | Plus |
| 3R | 27161455..27161615 | 81..241 | 100 | -> | Plus |
| 3R | 27161335..27161398 | 17..80 | 100 | -> | Plus |
| 3R | 27162179..27162779 | 562..1162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:09 Download gff for
BS27511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22987057..22987120 | 17..80 | 100 | -> | Plus |
| arm_3R | 22987177..22987337 | 81..241 | 100 | -> | Plus |
| arm_3R | 22987462..22987781 | 242..561 | 100 | -> | Plus |
| arm_3R | 22987901..22988501 | 562..1162 | 100 | | Plus |
BS27511.pep Sequence
Translation from 16 to 1161
> BS27511.pep
MVSAAIRLGLLLCILPQLVISQSSCVTPAQAAGQCIRYQECPFVQKILGI
YGRNIPRKIHNQISEMQCRSTTNTRDFHLCCPNEAPPQSNQESQRKVVRS
EGGNLNRYDRQGLQLLNSVTNCGNKGNPKVSGGKTARPGDFPWVALLKYK
INDPRPFRCGGSLISERHILTAAHCIIDQPEVIAVRLGEHDLESEEDCHY
LGGTNRVCIPPYEEYGIEQIRVHPNYVHGKISHDVAIIKLDRVVKEKSHI
KPVCLPIDQKSQELDFDQSFFVAGWGGTEKETVATKLQQALITRKSLNEC
RQYYNKGEVSDNHICATGTGIKHTCQGDSGGPVFFKHRFKNTYRVVQYGV
VSFGGRLCGQNQPGVFASVIDMLPWITQNLQ*
BS27511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5909-PA | 381 | CG5909-PA | 1..381 | 1..381 | 2052 | 100 | Plus |
| grass-PB | 377 | CG5896-PB | 32..372 | 25..380 | 510 | 33 | Plus |
| grass-PA | 335 | CG5896-PA | 20..330 | 52..380 | 483 | 33.5 | Plus |
| Sp7-PF | 391 | CG3066-PF | 12..390 | 10..381 | 433 | 30.8 | Plus |
| Sp7-PE | 391 | CG3066-PE | 12..390 | 10..381 | 433 | 30.8 | Plus |
