Clone BS27517 Report

Search the DGRC for BS27517

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG9422-RA
Protein status:BS27517.pep: full length peptide match
Sequenced Size:653

Clone Sequence Records

BS27517.complete Sequence

653 bp assembled on 2011-09-12

GenBank Submission: KX800721

> BS27517.complete
GAAGTTATCAGTCGACATGATGCACTACCGCAAGGCCGAGAATGTGGAGA
AGGAGCTGAGCAAGAGCGATCTGCCATTCGAGGACTGCATGCCAAAGTCC
CAAAAGGATTTTTTGTGGATGCATGTAAAAGGCGGTACCAAAGTGAGCAA
TGTGATTGAGTTTGCTCAGGAGGCGCTGAACAAGGGCGAGCACAGATGCG
TGGTGTGGAGCGGATCCGGCGGAGGAGTGGTGAAGACCATATCCTGTGCC
GAGGTCCTCAAGCGGAGCCACCCCCTCTACCAGGTGACGCGCATGGCCTA
CACCAGTGTGGAGGAGCACTGGAAGCCGCAAATGGAAGGCCTGGAGGAGA
TTATAGTCACACGCCAAATACCCACCCTGCACATCCTCATGAGTCTGGAC
GAGCTGCCGGATACTATAGATGGCTTACAAAAGCCAAATACGTCCACTGA
TTTTTGGGATGGCGGAGGAGCACAGCAACAGCCACATCCACGTTCCCAGC
CCCGCCATCAGCAGCAGCCACATAAACCAGGGGCTGGGCGTGGGGGTCGG
CCGAACAAACGGACCAGACCCGGACGCAATAAACCAGGCCAACAACCCGA
AAAACCTGCCGCTGAAGAGAATTTACCCGCCAGTTAGAAGCTTTCTAGAC
CAT

BS27517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9422-RD 621 CG9422-PD 1..621 17..637 3105 100 Plus
CG9422-RC 621 CG9422-PC 1..621 17..637 3105 100 Plus
CG9422-RA 621 CG9422-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9422-RD 1310 CG9422-RD 606..1227 17..638 3110 100 Plus
CG9422-RC 1388 CG9422-RC 112..733 17..638 3110 100 Plus
CG9422-RA 816 CG9422-RA 112..733 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6692292..6692507 423..638 1080 100 Plus
2R 25286936 2R 6691882..6692063 125..306 910 100 Plus
2R 25286936 2R 6692118..6692236 305..423 595 100 Plus
2R 25286936 2R 6691718..6691827 17..126 550 100 Plus
Blast to na_te.dros performed 2014-11-27 06:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2512 466..522 116 69 Plus

BS27517.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:11 Download gff for BS27517.complete
Subject Subject Range Query Range Percent Splice Strand
CG9422-RC 79..699 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:28 Download gff for BS27517.complete
Subject Subject Range Query Range Percent Splice Strand
CG9422-RA 112..732 17..637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:04 Download gff for BS27517.complete
Subject Subject Range Query Range Percent Splice Strand
CG9422-RA 112..732 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:04 Download gff for BS27517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6691718..6691825 17..124 100 -> Plus
2R 6691882..6692063 125..306 100 -> Plus
2R 6692120..6692236 307..423 100 -> Plus
2R 6692293..6692506 424..637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:28 Download gff for BS27517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2579223..2579330 17..124 100 -> Plus
arm_2R 2579387..2579568 125..306 100 -> Plus
arm_2R 2579625..2579741 307..423 100 -> Plus
arm_2R 2579798..2580011 424..637 100   Plus

BS27517.pep Sequence

Translation from 16 to 636

> BS27517.pep
MMHYRKAENVEKELSKSDLPFEDCMPKSQKDFLWMHVKGGTKVSNVIEFA
QEALNKGEHRCVVWSGSGGGVVKTISCAEVLKRSHPLYQVTRMAYTSVEE
HWKPQMEGLEEIIVTRQIPTLHILMSLDELPDTIDGLQKPNTSTDFWDGG
GAQQQPHPRSQPRHQQQPHKPGAGRGGRPNKRTRPGRNKPGQQPEKPAAE
ENLPAS*

BS27517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9422-PD 206 CG9422-PD 1..206 1..206 1117 100 Plus
CG9422-PC 206 CG9422-PC 1..206 1..206 1117 100 Plus
CG9422-PA 206 CG9422-PA 1..206 1..206 1117 100 Plus