Clone BS27518 Report

Search the DGRC for BS27518

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptNup43-RA
Protein status:BS27518.pep: gold
Sequenced Size:1109

Clone Sequence Records

BS27518.complete Sequence

1109 bp assembled on 2011-09-12

GenBank Submission: KX802798

> BS27518.complete
GAAGTTATCAGTCGACATGTCCATTGCAAACGTTTCCACGCACTACATAT
CCGAGAAGGTGTCCCAAGTGCGCTGGCTTCCGGAGGAACTGCAGCAGAGC
GAACGGTTCGTTACTGGAAGCTGGGACATGGACCAGAACTTCGTGCGCCT
CTGGCGGCTACAATCGAACCAATATGTCACCGCCACGGATTCGGAAGTGG
ACCAGATACCTCGCTGCATGGACAAGGTGAGAATGGAGGACGATGTGACC
GCCATGGAGTTCGTCGACAAGGACACGCTGGCTGTGAGCTGTGCCGATGG
TCATCTCAGCGTGTTTAACGTCCATCGAGCCGTGGAGGAGGATCAGATGC
AACGTACGTCCCGATCGGGACGTCTGCACTGCTTCCAACGTAGCCAGGAG
CCCGCTCCTTGCACCGACCTTTCTGTTTACGGCACGGATATCGCCACCGC
CGGCGAGGATGGGTGTGTAAGCATCGTCTCCGTGGAAAATGTGCGCCAGG
TGAAGCGACAGATTGAGGCGGACAGCATGGCGCTGTTTTCCATTTGCTAT
ATCAGCCAGCAGGAACTGGTGACTGCCAATAGGATGGGTGTTATCCGAAT
GCTGGACGCCCGAGTGGCCACTGAAGCGCAGCCGAAGACCACCTTTATGG
TGGCCTCCCAGGATGACAAGTCGAACTTTGTCTCGTCCCTTGCCAAGCAT
CCGATGCAGCAACATATTTTACTTTGCGGCAGCGAAGAGGGTTCCATAAC
CGTCTGGGATATGCGAAACCTCAGTTATCCCGCCTCCTATCTCAGCGCTC
ACAAAAGTCCCATCAACGAGATAGGCTTCCATCAAAAGGATCCCAGCAAA
CTGTTCACCGCCGCAGAAGGTGGCGAGGTGTGGATGTGGTCAGAGAACAA
AGTTCTCGGGTGCGACTATAACAAAGACGGACACAGCCCCTGGTTGTCTG
GCGATCGTGTTCGCTCCCTGGTCGATGTGGAGGGAGTGCTGAGTAATGTT
CGCAAGTCCATCAACTCCTTCGATGTGCATGGAAGTCGTCTGGTCTGCGG
AGGCGACACAGAAGCCGTTTACCTAGTTGATAATATTGTTTAAAAGCTTT
CTAGACCAT

BS27518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nup43-RA 1077 CG7671-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nup43-RA 1211 CG7671-RA 83..1160 17..1094 5390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18367067..18367862 299..1094 3980 100 Plus
3R 32079331 3R 18366720..18367006 17..303 1435 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:44:58 has no hits.

BS27518.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:11 Download gff for BS27518.complete
Subject Subject Range Query Range Percent Splice Strand
CG7671-RA 65..1139 17..1091 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:45 Download gff for BS27518.complete
Subject Subject Range Query Range Percent Splice Strand
Nup43-RA 83..1157 17..1091 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:15 Download gff for BS27518.complete
Subject Subject Range Query Range Percent Splice Strand
Nup43-RA 83..1157 17..1091 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:15 Download gff for BS27518.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18366720..18367002 17..299 100 -> Plus
3R 18367068..18367859 300..1091 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:45 Download gff for BS27518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14192442..14192724 17..299 100 -> Plus
arm_3R 14192790..14193581 300..1091 100   Plus

BS27518.pep Sequence

Translation from 16 to 1092

> BS27518.pep
MSIANVSTHYISEKVSQVRWLPEELQQSERFVTGSWDMDQNFVRLWRLQS
NQYVTATDSEVDQIPRCMDKVRMEDDVTAMEFVDKDTLAVSCADGHLSVF
NVHRAVEEDQMQRTSRSGRLHCFQRSQEPAPCTDLSVYGTDIATAGEDGC
VSIVSVENVRQVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDARV
ATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMR
NLSYPASYLSAHKSPINEIGFHQKDPSKLFTAAEGGEVWMWSENKVLGCD
YNKDGHSPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEA
VYLVDNIV*

BS27518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nup43-PA 358 CG7671-PA 1..358 1..358 1869 100 Plus