BS27519.complete Sequence
1133 bp assembled on 2011-09-12
GenBank Submission: KX806457
> BS27519.complete
GAAGTTATCAGTCGACATGGCTTTGGTTTGCGTAGAGGACTTTGAAAAGA
AGGCCGTTGGGCAACTGGAGAAGAATGCCCTGGACTACTACCGTAGCGGA
GCCGGTGAGCAGTTCACCTTGGGACTGAATCGCGAGGCCTTCCGCCGGCT
ACGCTTGCGACCTCGTTGTTTGAGAGATGTCTCCCGCCTGGACATTAGTA
CCAAGATCTTCGGCGAGCAGATGCAGTGGCCTCTGGGCATTGCTCCGACG
GCTATGCAGAAGATGGCCCATCCGGACGGCGAGGTAGGCAATGCCAGGGC
GGCCGGAAAAGCCGGCTCCATCTTTATACTCAGCACACTGTCCACCACTT
CGCTGGAGGATTTGGCAGCCGGTGCCCCGGATACCATCAAATGGTTCCAA
CTGTACATCTACAAGGATCGTACCATAACGGAAAAGCTGGTACGTCGTGC
CGAGAAGGCGAACTTCAAAGCGCTCGTCCTGACCATCGATGCTCCAATCT
TTGGACACCGTAGAGCCGATGTGCGCAACAACTTCAGCTTGCCGTCGCAC
CTGTCATTGGCCAATTTCCAGGGCGTTAAGGCTACTGGAGTGGGTAATGC
CGCTATGGGCGCCTCAGGCATTAATGAGTACGTCTCCAGCCAGTTTGATC
CAACCATAACCTGGAAGGATATTGCCTGGTTGAAGGGCATCACTCATCTG
CCCATTGTGGTCAAGGGAGTGCTGACTGCCGAAGATGCTGTGTTGGCCCA
GGAGTTTGGATGCGCCGGACTCATTGTTTCCAACCACGGTGCTCGTCAGA
TCGATACGGTTCCGGCCTCGATCGAAGCCCTGCCGGAGATCGTAAAGGCC
GTGGGAGATAATCTGGTGGTTATGCTGGACGGAGGCATTATGCAGGGCAA
TGATATCTTCAAGGCTTTGGCTTTGGGAGCCAAGACGGTCTTTGTGGGTC
GTCCGGCTGTCTGGGGATTGGCCTACAATGGACAGAAAGGCGTGGAGGAG
ATGCTGAGTGTGCTGAGAAAGGACTTTGAGACCACCATGGCGCTGATCGG
TTGCCAAAATTTGGGAGACATCACGTCGGCAATGGTGGTACATGAGAGTC
AATATGCCAAGCTGTAAAAGCTTTCTAGACCAT
BS27519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18003-RB | 1101 | CG18003-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18003-RB | 1322 | CG18003-RB | 85..1187 | 16..1118 | 5515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10884103..10884801 | 420..1118 | 3495 | 100 | Plus |
| 2R | 25286936 | 2R | 10883631..10884035 | 16..420 | 2025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:45:36 has no hits.
BS27519.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:12 Download gff for
BS27519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18003-RA | 3430..4528 | 17..1115 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:08 Download gff for
BS27519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18003-RB | 86..1184 | 17..1115 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:33 Download gff for
BS27519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18003-RB | 86..1184 | 17..1115 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:33 Download gff for
BS27519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10883632..10884035 | 17..420 | 100 | -> | Plus |
| 2R | 10884104..10884798 | 421..1115 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:08 Download gff for
BS27519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6771137..6771540 | 17..420 | 100 | -> | Plus |
| arm_2R | 6771609..6772303 | 421..1115 | 100 | | Plus |
BS27519.pep Sequence
Translation from 16 to 1116
> BS27519.pep
MALVCVEDFEKKAVGQLEKNALDYYRSGAGEQFTLGLNREAFRRLRLRPR
CLRDVSRLDISTKIFGEQMQWPLGIAPTAMQKMAHPDGEVGNARAAGKAG
SIFILSTLSTTSLEDLAAGAPDTIKWFQLYIYKDRTITEKLVRRAEKANF
KALVLTIDAPIFGHRRADVRNNFSLPSHLSLANFQGVKATGVGNAAMGAS
GINEYVSSQFDPTITWKDIAWLKGITHLPIVVKGVLTAEDAVLAQEFGCA
GLIVSNHGARQIDTVPASIEALPEIVKAVGDNLVVMLDGGIMQGNDIFKA
LALGAKTVFVGRPAVWGLAYNGQKGVEEMLSVLRKDFETTMALIGCQNLG
DITSAMVVHESQYAKL*
BS27519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18003-PB | 366 | CG18003-PB | 1..366 | 1..366 | 1865 | 100 | Plus |
