BS27522.complete Sequence
1352 bp assembled on 2011-10-21
GenBank Submission: KX801380
> BS27522.complete
GAAGTTATCAGTCGACATGTTTTACCCAAAAACACCATTTTTGGTGAACC
CGTTGCTGGAAGCCGATATCCTTAAAGTGAATTCTGCTGCACTTGCTCCG
CTGTTGGAATGGCTGTGCCTTACTCCCAAAGTCACCACTTACAGGGTGAA
CACTCTTAGGTGTTCCGTTGACGACTTTCGGAAAAAGTTAGAAGAAAAAC
TCGCCATTCGCTACGGTGTAAAATCTCCAAGGATTTACTGCTTGCCAAAC
CTACCCGAGATGTTGTGCATTGATCCGCTGGACTCACAGCTCACCAAAGC
TGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAACTGCGGAG
CTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTTAGCTATG
GAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAGATCTGGA
TGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCAAATAAGG
TTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCTGTTCAAC
AACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGTCCAACGT
CAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGCCTGTTGC
AAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCAGCCCGGC
GAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAAGCCACAT
AGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGACAATTCGG
CCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAAAAGCATA
ACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACGCTCCATC
TGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAAAGCTTTG
ACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCGGCCACAG
TTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATCCCCATAT
TCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCTGGCGGCA
TCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGAATGTCTT
GTGGCCTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAGATGCCAC
TCCCCGGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAGGCATGTA
AATCTCGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGCGGACACT
GTGGGCTTTTTTATTGCGAAGTTTCAGAAAATATAAAAGCTTTCTAGACC
AT
BS27522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11109-RB | 1320 | CG11109-PB | 1..1320 | 17..1336 | 6600 | 100 | Plus |
| CG11109-RA | 1077 | CG11109-PA | 1..1077 | 260..1336 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11109-RB | 1415 | CG11109-RB | 82..1402 | 17..1337 | 6605 | 100 | Plus |
| CG11109-RA | 1445 | CG11109-RA | 178..1432 | 83..1337 | 6275 | 100 | Plus |
| CG11109-RA | 1445 | CG11109-RA | 24..89 | 17..82 | 330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22872435..22873689 | 83..1337 | 6275 | 100 | Plus |
| 3L | 28110227 | 3L | 22872281..22872346 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:27:10 has no hits.
BS27522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:16:42 Download gff for
BS27522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11109-RB | 83..1386 | 24..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:36 Download gff for
BS27522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11109-RB | 89..1392 | 24..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:32 Download gff for
BS27522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11109-RB | 89..1392 | 24..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:32 Download gff for
BS27522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22872288..22872346 | 24..82 | 100 | -> | Plus |
| 3L | 22872435..22873679 | 83..1327 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:36 Download gff for
BS27522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22865388..22865446 | 24..82 | 100 | -> | Plus |
| arm_3L | 22865535..22866779 | 83..1327 | 100 | | Plus |
BS27522.pep Sequence
Translation from 16 to 1335
> BS27522.pep
MFYPKTPFLVNPLLEADILKVNSAALAPLLEWLCLTPKVTTYRVNTLRCS
VDDFRKKLEEKLAIRYGVKSPRIYCLPNLPEMLCIDPLDSQLTKAVADSE
LKEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYADLDGKCKR
GTVKRYESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPT
LGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMG
DRGSVVALDNSASRVRSMLPKLGHYKSITAHVFNSTEAVAADAPSAPVGE
FTGPPFPCESFDRILLDAPCSGLGNRPQLSCSIKQVKVLSSYPHIQRRLF
EQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKFVELRLTDATPRWGG
PGLPLPGFEACKSRLLQRFGPSGANADTVGFFIAKFQKI*
BS27522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11109-PB | 439 | CG11109-PB | 1..439 | 1..439 | 2286 | 100 | Plus |
| CG11109-PA | 358 | CG11109-PA | 1..358 | 82..439 | 1859 | 100 | Plus |
| CG8545-PA | 891 | CG8545-PA | 418..637 | 210..438 | 245 | 31.7 | Plus |
