BS27527.complete Sequence
1928 bp assembled on 2011-10-14
GenBank Submission: KX804221
> BS27527.complete
GAAGTTATCAGTCGACATGCTTGCGTTGTTGGCAAGCGGATCGAGCAGAA
GCAGCAGCAACAACAAACTGGCCGAATCGGAAAACTCAGCGCAAAACTCC
AACAACATGAGTTGGGGCACCGAGCTATGGGATCAAAACGAGAATCTGGC
GATACACACAAACAGAGGCATCGATGCTCTGGACAAGTTTGCCAACTTCT
TACGCGATCGAGTGGCCATAGAAACGGAATATGCCGGCAAATTAAGGCGC
CTAGTGAAAAACTACCAGCCCAAAAAGAAGGAGGAGGAAGACAATGAATT
CACATCGGTGCAAGCGTTCCGCAATCTGCTCAAGGAGGTGGGCGATCTGG
CGGGACAGCGCGAGGTGGTGTCCGAGTCCCTGCAGCTGCAGATCATTGCG
GGAGTGACGCTTCTGTCCAAGACATTGCGCGAGGAACGCAAGAAATGCCT
TAGCGATGGTGCCACCCTGCAGCAGAACCTCACCACACAGCTCTCCTCGC
TGGACCGGGCCAAGCGGAACTACGAGAAGGCCTACCGTGACTCGGAGAAG
GCGGTGGACAGCTATAAGCGGGCAGACATGGACCTCAATCTCAGCCGGGC
CGAGGTGGAGCGCTACAAGAACGTGATGACGTCCAAGATCCAGCAGTCGG
ACGATGCGAAGAACGAGTACGCTAACCAGCTACAGAAGACGAACAATCTG
CAGCAGCAACACTACAGCATGCTGCTGCCCTCGGTCCTCAATCGGCTGCA
GGAGCTGGACGAGAAACGCACCCGTGGCTTCAGGGAGTTCATTGTGGGAG
CGGCGGATGTGGAGTCATCGGTGGCGCCAATCATAGCCCGCTGCATGGAG
GGTATCGTGAAGGCCGGCGAGTCCATCAACGAAAAGGAGGATACCTTCAA
AGTCATAGAAAGATATCAATCTGGTTTCACGCCACCAAGGGACATACCCT
TCGAGGATCTGTCCAAGTGCGATCCGGATTCCGTGCAGGACTCACACTAC
AGCAACTCGACATCGAACCACCTGACCATTAGAGGCACGATGAGTGCCAA
CAAGCTGAAGAAACGCGTGGGCATTTTTAACATATTCGGCAGCAATAAGA
ATTCCCTGACTGCGGATGGACAAAAGGAGGACTTCAGCGATCTGCCACCG
AATCAACGAAGAAAGAAACTGCAGGCGAAGATCGCCGAACTGACACAGAA
TATCGCCCAGGAAACAAAAGCACGGGATGGCCTGATGAAGATGAAGATCG
TCTATGAGGCGAACTCATCGCTGGGCAATCCCATGACCGTCGAGGGACAA
CTGAACGAGTCGGAACACAAGTTGGAGAAGCTGAAAGTGGATCTAAAGAA
GTACCAGGGCTTCTTGGAGAAGGCAAGCCAAGTGCCGACGGCCACCAGTA
GTCCGCAGGCGAGTCGAAATCAATTGCAAAACGGTCACCGAACCTCTAGA
CATTCCAATGGCAGTGCCGATGACCATCATGATGATGGCGACGACCAGCC
CGATGATGCTGGCAGCTTAAGCAGGTCAGATTCTGAGGATAATGTGGCGC
AAATACAAAATGGGCATAATAATAACAATAACGGTTCGGCAAGTCCCGAG
AGTGGCCTTGGCACTTCGCACACATCCCTGCCAGGATCAGGACAGGGCAG
CGCCAACGAAAACGCGATTGGCGAGGATACCTACTATGAAACGGAAGTGG
AGACCCTTAATCCAGTGGGAAAATGTCGTGCCCTGTATCCATTTGAAGCC
TCCAGCGAGGGTAGCATACCCATGAGTGAGGGCGAGGAGCTGCAAGTGAT
CGAGATCGACCAAGGAGACGGATGGACGCGGGTGCGGCGGGAGAACAACT
CCAATGGCTGGGACGAGGGCTTCGTGCCCACGAGTTACATCGAGATCACG
CTCTATGCTTAGAAGCTTTCTAGACCAT
BS27527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RA | 1896 | CG15015-PA | 1..1896 | 17..1912 | 9480 | 100 | Plus |
| Cip4-RB | 1998 | CG15015-PB | 115..1998 | 29..1912 | 9420 | 100 | Plus |
| Cip4-RF | 1887 | CG15015-PF | 100..1887 | 128..1912 | 8860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RA | 2525 | CG15015-RA | 103..1998 | 17..1912 | 9480 | 100 | Plus |
| Cip4-RB | 2637 | CG15015-RB | 227..2110 | 29..1912 | 9420 | 100 | Plus |
| Cip4-RF | 2414 | CG15015-RF | 100..1887 | 128..1912 | 8860 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4327233..4327704 | 912..441 | 2360 | 100 | Minus |
| 3L | 28110227 | 3L | 4325061..4325412 | 1449..1098 | 1760 | 100 | Minus |
| 3L | 28110227 | 3L | 4326984..4327172 | 1099..911 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 4324057..4324222 | 1912..1747 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 4324284..4324448 | 1748..1584 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 4327773..4327917 | 442..298 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4324862..4324999 | 1584..1447 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 4338066..4338183 | 247..130 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 4363026..4363127 | 131..30 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 4336269..4336321 | 297..245 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:54:46 has no hits.
BS27527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:47 Download gff for
BS27527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RA | 121..2016 | 17..1912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:56 Download gff for
BS27527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RA | 103..1998 | 17..1912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:26 Download gff for
BS27527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RA | 103..1998 | 17..1912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:26 Download gff for
BS27527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4326984..4327170 | 913..1099 | 100 | <- | Minus |
| 3L | 4327773..4327917 | 298..442 | 100 | <- | Minus |
| 3L | 4336269..4336319 | 247..297 | 100 | <- | Minus |
| 3L | 4338067..4338182 | 131..246 | 100 | <- | Minus |
| 3L | 4363027..4363127 | 30..130 | 100 | <- | Minus |
| 3L | 4324057..4324220 | 1749..1912 | 100 | <- | Minus |
| 3L | 4324284..4324447 | 1585..1748 | 100 | <- | Minus |
| 3L | 4324862..4324996 | 1450..1584 | 100 | <- | Minus |
| 3L | 4325061..4325410 | 1100..1449 | 100 | <- | Minus |
| 3L | 4327233..4327702 | 443..912 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:56 Download gff for
BS27527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4324862..4324996 | 1450..1584 | 100 | <- | Minus |
| arm_3L | 4324057..4324220 | 1749..1912 | 100 | <- | Minus |
| arm_3L | 4324284..4324447 | 1585..1748 | 100 | <- | Minus |
| arm_3L | 4326984..4327170 | 913..1099 | 100 | <- | Minus |
| arm_3L | 4325061..4325410 | 1100..1449 | 100 | <- | Minus |
| arm_3L | 4327233..4327702 | 443..912 | 100 | <- | Minus |
| arm_3L | 4327773..4327917 | 298..442 | 100 | <- | Minus |
| arm_3L | 4336269..4336319 | 247..297 | 100 | <- | Minus |
| arm_3L | 4338067..4338182 | 131..246 | 100 | <- | Minus |
| arm_3L | 4363027..4363127 | 30..130 | 100 | <- | Minus |
BS27527.pep Sequence
Translation from 16 to 1911
> BS27527.pep
MLALLASGSSRSSSNNKLAESENSAQNSNNMSWGTELWDQNENLAIHTNR
GIDALDKFANFLRDRVAIETEYAGKLRRLVKNYQPKKKEEEDNEFTSVQA
FRNLLKEVGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGAT
LQQNLTTQLSSLDRAKRNYEKAYRDSEKAVDSYKRADMDLNLSRAEVERY
KNVMTSKIQQSDDAKNEYANQLQKTNNLQQQHYSMLLPSVLNRLQELDEK
RTRGFREFIVGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVIERY
QSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSNHLTIRGTMSANKLKKR
VGIFNIFGSNKNSLTADGQKEDFSDLPPNQRRKKLQAKIAELTQNIAQET
KARDGLMKMKIVYEANSSLGNPMTVEGQLNESEHKLEKLKVDLKKYQGFL
EKASQVPTATSSPQASRNQLQNGHRTSRHSNGSADDHHDDGDDQPDDAGS
LSRSDSEDNVAQIQNGHNNNNNGSASPESGLGTSHTSLPGSGQGSANENA
IGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGEELQVIEIDQG
DGWTRVRRENNSNGWDEGFVPTSYIEITLYA*
BS27527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-PA | 631 | CG15015-PA | 1..631 | 1..631 | 3229 | 100 | Plus |
| Cip4-PB | 665 | CG15015-PB | 38..665 | 4..631 | 3216 | 100 | Plus |
| Cip4-PH | 644 | CG15015-PH | 1..644 | 1..631 | 3194 | 98 | Plus |
| Cip4-PC | 612 | CG15015-PC | 1..612 | 1..631 | 3088 | 96.8 | Plus |
| Cip4-PG | 612 | CG15015-PG | 1..612 | 1..631 | 3088 | 96.8 | Plus |
