BS27528.complete Sequence
1748 bp assembled on 2011-10-14
GenBank Submission: KX803671
> BS27528.complete
GAAGTTATCAGTCGACATGGCACACATCACGACGACGCACGGCAGCTTAA
GCCAAGCGACAAGGTCTTTGCCCAAATTGAGCAGTCAAGACGAAGAAGGG
GGGGCTGGTCATGGCTTTGGTGGCGGACCGCAACACTTTGAACCCATTCC
TCACGATCATGATTTCTGCGAAAGAGTCGTTATAAATGTAAGCGGATTAA
GGTTTGAGACACAACTACGTACGTTAAATCAATTCCCGGACACGCTGCTT
GGGGATCCAGCTCGGAGATTACGGTACTTTGACCCGCTTAGAAATGAATA
TTTTTTTGACCGTAGTCGACCGAGCTTCGATGCGATTTTATACTATTATC
AGAGTGGTGGCCGACTACGGAGACCGGTCAATGTCCCTTTAGACGTATTT
AGTGAAGAAATAAAATTTTATGAATTAGGTGATCAAGCAATTAATAAATT
CAGAGAGGATGAAGGCTTTATTAAAGAGGAAGAAAGACCATTACCGGATA
ATGAGAAACAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCG
CAAGCCGCCAGAGTTGTAGCCATAATTAGTGTATTTGTTATATTGCTATC
AATTGTTATATTTTGTCTAGAAACATTACCCGAATTTAAGCATTACAAGG
TGTTCAATACAACAACAAATGGCACAAAAATCGAGGAAGACGAGGTGCCT
GACATCACAGATCCTTTCTTCCTTATAGAAACGTTATGTATTATTTGGTT
TACATTTGAACTAACTGTCAGGTTCCTCGCATGTCCGAACAAATTAAATT
TCTGCAGGGATGTCATGAATGTTATCGACATAATCGCCATCATTCCGTAC
TTTATAACACTAGCGACTGTCGTTGCCGAAGAGGAGGATACGTTAAATCT
TCCAAAAGCGCCAGTCAGTCCACAGGACAAGTCATCGAATCAGGCTATGT
CCTTGGCAATATTACGAGTGATACGATTAGTTCGAGTATTTCGAATATTT
AAGTTATCTAGGCATTCGAAGGGTTTACAAATATTAGGACGAACTCTGAA
AGCCTCAATGCGGGAATTAGGTTTACTTATATTTTTCTTATTTATAGGCG
TCGTACTCTTCTCATCGGCGGTTTATTTTGCGGAAGCTGGAAGCGAAAAT
TCCTTCTTCAAGTCCATACCCGATGCATTTTGGTGGGCGGTCGTTACCAT
GACCACCGTTGGATATGGTGACATGACGCCCGTCGGCTTCTGGGGCAAAA
TTGTCGGCTCTTTGTGCGTGATCGCTGGTGTGCTGACAATCGCACTGCCG
GTACCGGTTATCGTCAGTAATTTCAATTACTTCTATCACCGCGAAACGGA
TCAGGAGGAGATGCAGAGCCAAAATTTCAACCACGTTACAAGTTGTTCAT
ATTTACCTGGTGCACTAGGTCAACATTTGAAGAAATCCTCACTCTCCGAA
TCGTCGTCGGACATAATGGATTTGGATGATGGCATTGATGCAACCACGCC
AGGTCTGACTGATCACACGGGCCGCCACATGGTGCCGTTTCTCAGGACAC
AGCAGTCATTCGAGAAGCAGCAGCTCCAGCTTCAGCTGCAGCTGCAGCAG
CAGTCGCAGTCGCCGCACGGCCAACAGATGACGCAGCAGCAGCAGCTGGG
CCAGAACGGCCTAAGGAGCACAAATAGTTTACAGTTAAGGCATAATAACG
CGATGGCCGTCAGTATTGAGACCGACGTCTGAAAGCTTTCTAGACCAT
BS27528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh-RD | 1716 | CG12348-PD | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Sh-RS | 1815 | CG12348-PS | 145..1815 | 62..1732 | 8355 | 100 | Plus |
Sh-RR | 1851 | CG12348-PR | 182..1851 | 63..1732 | 8350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh-RD | 2442 | CG12348-RD | 275..1990 | 17..1732 | 8580 | 100 | Plus |
Sh-RS | 3836 | CG12348-RS | 1496..3166 | 62..1732 | 8355 | 100 | Plus |
Sh-RR | 2843 | CG12348-RR | 722..2391 | 63..1732 | 8350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17930124..17930440 | 1732..1416 | 1585 | 100 | Minus |
X | 23542271 | X | 17951412..17951613 | 652..451 | 1010 | 100 | Minus |
X | 23542271 | X | 17930584..17930776 | 1420..1228 | 965 | 100 | Minus |
X | 23542271 | X | 17949920..17950094 | 1098..924 | 875 | 100 | Minus |
X | 23542271 | X | 17952986..17953156 | 358..188 | 855 | 100 | Minus |
X | 23542271 | X | 17950610..17950768 | 926..768 | 795 | 100 | Minus |
X | 23542271 | X | 17945218..17945355 | 1228..1091 | 675 | 99.3 | Minus |
X | 23542271 | X | 17953221..17953348 | 189..62 | 640 | 100 | Minus |
X | 23542271 | X | 17951190..17951315 | 773..648 | 630 | 100 | Minus |
X | 23542271 | X | 17942780..17942971 | 1420..1229 | 540 | 85.4 | Minus |
X | 23542271 | X | 17952677..17952774 | 453..356 | 490 | 100 | Minus |
X | 23542271 | X | 17946600..17946730 | 1226..1096 | 310 | 82.4 | Minus |
X | 23542271 | X | 18014262..18014310 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:57:20 has no hits.
BS27528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:47 Download gff for
BS27528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1989 | 17..1731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:00 Download gff for
BS27528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1989 | 17..1731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:30 Download gff for
BS27528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1989 | 17..1731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:30 Download gff for
BS27528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18014264..18014310 | 17..63 | 100 | | Minus |
X | 17949921..17950092 | 926..1097 | 100 | <- | Minus |
X | 17950611..17950764 | 772..925 | 100 | <- | Minus |
X | 17951192..17951313 | 650..771 | 100 | <- | Minus |
X | 17951415..17951610 | 454..649 | 100 | <- | Minus |
X | 17952677..17952773 | 357..453 | 100 | <- | Minus |
X | 17952988..17953156 | 188..356 | 100 | <- | Minus |
X | 17953223..17953346 | 64..187 | 100 | <- | Minus |
X | 17930125..17930437 | 1419..1731 | 100 | <- | Minus |
X | 17930586..17930776 | 1228..1418 | 100 | <- | Minus |
X | 17945219..17945348 | 1098..1227 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:00 Download gff for
BS27528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17845448..17845643 | 454..649 | 100 | <- | Minus |
arm_X | 17846710..17846806 | 357..453 | 100 | <- | Minus |
arm_X | 17824619..17824809 | 1228..1418 | 100 | <- | Minus |
arm_X | 17839252..17839381 | 1098..1227 | 100 | <- | Minus |
arm_X | 17847021..17847189 | 188..356 | 100 | <- | Minus |
arm_X | 17847256..17847379 | 64..187 | 100 | <- | Minus |
arm_X | 17908297..17908343 | 17..63 | 100 | | Minus |
arm_X | 17843954..17844125 | 926..1097 | 100 | <- | Minus |
arm_X | 17844644..17844797 | 772..925 | 100 | <- | Minus |
arm_X | 17845225..17845346 | 650..771 | 100 | <- | Minus |
arm_X | 17824158..17824470 | 1419..1731 | 100 | <- | Minus |
BS27528.pep Sequence
Translation from 16 to 1731
> BS27528.pep
MAHITTTHGSLSQATRSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDF
CERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRS
RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEG
FIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC
LETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELT
VRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPV
SPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRE
LGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY
GDMTPVGFWGKIVGSLCVIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQ
SQNFNHVTSCSYLPGALGQHLKKSSLSESSSDIMDLDDGIDATTPGLTDH
TGRHMVPFLRTQQSFEKQQLQLQLQLQQQSQSPHGQQMTQQQQLGQNGLR
STNSLQLRHNNAMAVSIETDV*
BS27528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh-PD | 571 | CG12348-PD | 1..571 | 1..571 | 2963 | 100 | Plus |
Sh-PS | 604 | CG12348-PS | 49..604 | 16..571 | 2887 | 100 | Plus |
Sh-PR | 616 | CG12348-PR | 62..616 | 17..571 | 2882 | 100 | Plus |
Sh-PQ | 616 | CG12348-PQ | 62..616 | 17..571 | 2882 | 100 | Plus |
Sh-PB | 616 | CG12348-PB | 62..616 | 17..571 | 2882 | 100 | Plus |