BS27529.complete Sequence
1670 bp assembled on 2011-09-12
GenBank Submission: KX800913
> BS27529.complete
GAAGTTATCAGTCGACATGCACCAAGTTGGCAGTACCAACATGATGAAGA
TTCAATCGATTGCTCAGTTATCGATAACCATGGACGCGGGCACCAAAATC
CTAGTTGTGGGCGATGTGCGAGGTCGCTTCAAGCAGCTATTTCAGCGCGT
GGAGCAGGTCAACAAAAAAGCGGGACCCTTCGAAATCCTTTGCTGCGTCG
GTGACTTCTTCGGGGAGGACAAGCAAAACGAGGAACTGATTGCCTACAAA
AATGGTTTTAAGCATATCACTGTTCCCACCTATATCCTGGGACCCAACCA
AAGGGAGCATGAAAAATACTTTGAAAATCTGACGGACGGTGAAATCTGCA
CCAATCTTACGTATCTTGGTCGACGTGGGGTCTACACGCTGAGCAGTGGT
GTTAAAATTGCCTATCTAAGTGGTTTGGAGGCACAGGGCACTGCAGATTC
CGCTGGCTCGGAACACGAGTTCACCAAAGCCGATGTCATCGCTGTGAGGA
ACTCATGTTTGGTGTCCAAGAACTGCTCCACAGAGTACCGCGGTGTGGAT
GTGCTCCTAACATCGCAATGGCCCTTTGGTATGCAGGAGAAGGAAAACGC
CACAGCATCCAAGTTGGTATCATTTCTTTGTCGTGAAATAAAGCCGCGCT
ATCACTTTTGTGCCATTAATGGAACACACTACGAAAGCGCACCCTTTCGG
ATGCCCAAAGATGAGACTACCCAGTTTGAACTGTGCACTCGCTTCATTTC
CCTTGCGGAAGTGGGAAATGCCGAAAAAGCCAAGTACATCTATGCACTCA
GCCTGAAGCCAGTAGACAAATCACGCTTATTGGACCTAGCGCAGAAGACA
ACAAATGAAATTCCGTGTCCTTTCATTGGCTTGGACTTAGGCGGAGCTAT
TGGCAAGAATGATTCGTCAGAAAACCGACAATACTTCTACGACATGGATG
GTGGCAGACGCAAGCGACAAGGCGGTGATAATAACAAAAGAGATAAACGT
CCTAGAATACCGCAGATTGAGCAAGATAAATGCTGGTTCTGTTTATCCTC
ACCTGATGTGGAGAAGCATCTCATTATCACTGTGGGCGAACATTTTTATC
TTGCTCTGGCCAAAGGACCGATTAACAAACACCATGTCATGATATTGTCC
ACCAAGCATGTGCCCTGCGCTGCTCAACTAAGTCCAGATGATTGGAAGGA
GCTCAACAAGTTCAAGGCAGCTTTGCGAAAGTTCTTCAAAACGTTAGGCC
AAGTGGTGTGTTTTACTGAACGGCACTATAAATCGGTTCACCTACAAATC
AACGCGCTTGCCTTTGAAGAAGGCTATGCCTGGAAGATAAAACATAGTTT
TGAGGATAAGGCGGAGGAATTTAATCTGGAATTTGAGACACTTCCCGCAT
TGGATTCTGAGAAAATGCTGCCTGAAATGGGACCTTATTTCCTGGCCGAG
TTACCCGACGATAGCACACTTATAACGCGGCAAATGAAACACTTTCCCAT
TCATTTCGCAAGGGACGTGTTCTGTTCGGAGAATCTTCTTAACTGCGATG
AAAAAGTGAACTGGAAGGATTGCCTTCTCGATAAGGACGAAGAAGTGGCG
TATGTGGAAGATTTCCGAAAGGCTTTTGCGCCCTTTGATTTTACAGACGA
TTAAAAGCTTTCTAGACCAT
BS27529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7741-RA | 1638 | CG7741-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| CG7741-RB | 1575 | CG7741-PB | 1..1575 | 80..1654 | 7875 | 100 | Plus |
| CG7741-RC | 1074 | CG7741-PC | 1..1074 | 581..1654 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7741-RA | 3158 | CG7741-RA | 1406..3043 | 17..1654 | 8190 | 100 | Plus |
| CG7741-RB | 1708 | CG7741-RB | 1..1593 | 62..1654 | 7965 | 100 | Plus |
| CG7741-RC | 1703 | CG7741-RC | 1..1588 | 62..1654 | 7855 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11303820..11304152 | 267..599 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 11304749..11305080 | 1024..1355 | 1660 | 100 | Plus |
| 2R | 25286936 | 2R | 11304208..11304525 | 599..916 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 11303596..11303762 | 100..266 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 11305136..11305296 | 1353..1513 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 11305349..11305492 | 1511..1654 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 11304583..11304692 | 916..1025 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 11303450..11303532 | 17..99 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:18 has no hits.
BS27529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:14 Download gff for
BS27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1401..3036 | 17..1652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:16 Download gff for
BS27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1406..3041 | 17..1652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:23 Download gff for
BS27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1406..3041 | 17..1652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:23 Download gff for
BS27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11303450..11303532 | 17..99 | 100 | -> | Plus |
| 2R | 11303596..11303762 | 100..266 | 100 | -> | Plus |
| 2R | 11303820..11304151 | 267..598 | 100 | -> | Plus |
| 2R | 11304208..11304525 | 599..916 | 100 | -> | Plus |
| 2R | 11304584..11304692 | 917..1025 | 100 | -> | Plus |
| 2R | 11304751..11305079 | 1026..1354 | 100 | -> | Plus |
| 2R | 11305138..11305295 | 1355..1512 | 100 | -> | Plus |
| 2R | 11305351..11305490 | 1513..1652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:16 Download gff for
BS27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7192856..7192995 | 1513..1652 | 100 | | Plus |
| arm_2R | 7190955..7191037 | 17..99 | 100 | -> | Plus |
| arm_2R | 7191101..7191267 | 100..266 | 100 | -> | Plus |
| arm_2R | 7191325..7191656 | 267..598 | 100 | -> | Plus |
| arm_2R | 7191713..7192030 | 599..916 | 100 | -> | Plus |
| arm_2R | 7192089..7192197 | 917..1025 | 100 | -> | Plus |
| arm_2R | 7192256..7192584 | 1026..1354 | 100 | -> | Plus |
| arm_2R | 7192643..7192800 | 1355..1512 | 100 | -> | Plus |
BS27529.pep Sequence
Translation from 16 to 1653
> BS27529.pep
MHQVGSTNMMKIQSIAQLSITMDAGTKILVVGDVRGRFKQLFQRVEQVNK
KAGPFEILCCVGDFFGEDKQNEELIAYKNGFKHITVPTYILGPNQREHEK
YFENLTDGEICTNLTYLGRRGVYTLSSGVKIAYLSGLEAQGTADSAGSEH
EFTKADVIAVRNSCLVSKNCSTEYRGVDVLLTSQWPFGMQEKENATASKL
VSFLCREIKPRYHFCAINGTHYESAPFRMPKDETTQFELCTRFISLAEVG
NAEKAKYIYALSLKPVDKSRLLDLAQKTTNEIPCPFIGLDLGGAIGKNDS
SENRQYFYDMDGGRRKRQGGDNNKRDKRPRIPQIEQDKCWFCLSSPDVEK
HLIITVGEHFYLALAKGPINKHHVMILSTKHVPCAAQLSPDDWKELNKFK
AALRKFFKTLGQVVCFTERHYKSVHLQINALAFEEGYAWKIKHSFEDKAE
EFNLEFETLPALDSEKMLPEMGPYFLAELPDDSTLITRQMKHFPIHFARD
VFCSENLLNCDEKVNWKDCLLDKDEEVAYVEDFRKAFAPFDFTDD*
BS27529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7741-PA | 545 | CG7741-PA | 1..545 | 1..545 | 2902 | 100 | Plus |
| CG7741-PB | 524 | CG7741-PB | 1..524 | 22..545 | 2801 | 100 | Plus |
| CG7741-PC | 357 | CG7741-PC | 1..357 | 189..545 | 1921 | 100 | Plus |
| CG9213-PB | 687 | CG9213-PB | 440..687 | 311..545 | 178 | 23.8 | Plus |
| CG9213-PA | 687 | CG9213-PA | 440..687 | 311..545 | 178 | 23.8 | Plus |
