BS27530.complete Sequence
2042 bp assembled on 2011-10-14
GenBank Submission: KX802666
> BS27530.complete
GAAGTTATCAGTCGACATGTTAATAGCAAGCGGCTTCTTACTGTTTCAGT
TTCTTTCATACGGTTTGGGAGTTCCACCCTTGGTCAGAATTGGAGCTATA
TTTTCAAACCAGCCTGGAATGTATAACTCGGAGTTAGCGTTTAGATACGC
TATTCATAGACTTAATATGGACAAAAGCCTTTTGCCTGAGACTACCGTTG
ATTACTATGTTGAATACGTAAACCGATTTGACTCTTTCGAGACAGTTCAA
AAAGTGTGCAAACTTATACGAGTTGGTGTTCAAGCTGTTTTTAGTCCAAC
TGACTCTGTTTTGGCGACCCATATAAATTCAATTTGCGACGCACTGGACA
TCCCAAACATAGGCCGGTCTGCCCATGACTTTTCTATTAACGTCTATCCA
TCGAAGCAACTTGTAAATTATGCCTTTAACGATGTAATACAGTATTTAAA
TTGGACACGCTTTGGGATATTGCATGAAAAAGAAAATGGAATCATAAACT
TGCATCAGCTATCCCGGTCATTTCACGGAGAAGTTCATATGCGACAAGTT
TCTCGGGATTCATATGTATCCGCATTGAACGAATTTAAAGGAAAGGAAAT
ACATAATATTATTATTGATACAAACTCGAACGGTATTTCCATATTGTTGA
AAAATATATTGCAGCAACAAATGAATGAATACAAGTACCATTACTTGTTT
ACAAGCTTCGATTTGGAAACTTATGATCTGGAAGACTTTAAATATAATTT
CGTGAACATTACATCGTTTCGATTGGTCGACACTGCGGATGTTGGGGTAA
AGCAAATCTTGAAGGATATCGGATTGTATAGTCACCATATATTTAAAAAA
CCTTATTTGAATCTACATATTAAAAAATCAACCATTCTTGAGTCAGAGCC
AGCCCTAATGTTCGATTCGGTGTACGTTTTCGCGATTGGATTGCAGACAC
TGGAACAATCACACTCTTTAACCCTTTTAAATATAAGCTGCGAGGAGGAA
AACTCGTGGGACGGGGGCCTTAGTCTTATTAACTACTTAAATGCGGTTGA
ATGGAAAGGTCTGACAGGTCCGATTCAGTTTAAAGATGGCCAGCGGGTCC
AGTTCAAGTTGGACTTAATTAAATTAAAGCAACATTCCATTGTAAAAGTC
GGGGAATGGACTCCTCATGGGCATCTGAATATAACTGAACCATCAATGTT
TTTCGATGCTGGGTCCATGAATGTGACACTTGTAGTGATAACAATTCTGG
AAACACCATATGTAATGATGCATTATGGGAAGAATTTTACGGGAAACGAA
CGATTTTATGGTTTTTGCGTAGATATATTGGAAACCATTTCTCGGGAAGT
TGGGTTTGATTACATACTGGATCTGGTACCGGATAGAAAGTATGGGGCCA
AGGACCCCGAAACTGGGGAATGGAACGGAATGGTCGCTCAGCTGATGAAA
TATAAGGCGGACCTGGCAGTTGGATCTATGACTATAACGTATGCAAGAGA
AAGCGTCATTGATTTTACCAAACCATTTATGAACTTGGGGATAAGTATTT
TATTTAAGGTCCCAACATCAGAGCCAACGAGACTTTTTTCATTTATGAAT
CCATTAGCGATAGAGATTTGGATATATGTGCTAATTGCATATTTTCTTGT
GTCTCTCTGCATATATATTGTTGGAAAACTTTCGCCTATCGAGTGGAAGT
GCATTAACGCCTGCGATCTAGAAAATATTTCTATTGGCAACCAGTTCTCC
CTAACTGACAGTTTTTGGTTTACCATAGGGACTTTTATGCAACAGTCACC
TGATATTTATCCACGAGCAATGTCGACTCGAATAATAAGCAGTACTTGGG
GTTTTTTTTCACTTATTATTGTCGCATCCTACACCGCAAATCTAGCAGCT
TTTTTGACAACGGAGCGCATGATTAATCCTATCGAGAACGCAGAGGATTT
GGCTTCTCAAACTGAGATTTCTTATGGCACTCTAGATAGCGGATCTACAA
TGACATTTTTTCGGGTATGCAACTAGAAGCTTTCTAGACCAT
BS27530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9935-RA | 2010 | CG9935-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
| CG9935-RB | 2700 | CG9935-PB | 1..1999 | 17..2015 | 9995 | 100 | Plus |
| CG9935-RD | 2697 | CG9935-PD | 1..1996 | 17..2015 | 9915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9935-RA | 2971 | CG9935-RA | 30..2046 | 10..2026 | 10055 | 99.9 | Plus |
| CG9935-RB | 2913 | CG9935-RB | 30..2035 | 10..2015 | 10000 | 99.9 | Plus |
| CG9935-RD | 2910 | CG9935-RD | 30..2032 | 10..2015 | 9920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 639581..640051 | 2026..1556 | 2355 | 100 | Minus |
| 4 | 1348131 | 4 | 642492..642728 | 892..656 | 1185 | 100 | Minus |
| 4 | 1348131 | 4 | 645948..646184 | 489..253 | 1185 | 100 | Minus |
| 4 | 1348131 | 4 | 637333..637569 | 656..892 | 1170 | 99.6 | Plus |
| 4 | 1348131 | 4 | 640532..640737 | 1250..1045 | 1030 | 100 | Minus |
| 4 | 1348131 | 4 | 640273..640477 | 1453..1249 | 1025 | 100 | Minus |
| 4 | 1348131 | 4 | 643989..644156 | 655..488 | 840 | 100 | Minus |
| 4 | 1348131 | 4 | 646233..646395 | 254..92 | 815 | 100 | Minus |
| 4 | 1348131 | 4 | 637626..637787 | 886..1047 | 795 | 99.4 | Plus |
| 4 | 1348131 | 4 | 642274..642435 | 1047..886 | 795 | 99.4 | Minus |
| 4 | 1348131 | 4 | 640105..640211 | 1560..1454 | 535 | 100 | Minus |
| 4 | 1348131 | 4 | 646444..646527 | 93..10 | 390 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:58:23 has no hits.
BS27530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:48 Download gff for
BS27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 42..2046 | 22..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:33 Download gff for
BS27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 42..2046 | 22..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:01 Download gff for
BS27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 42..2046 | 22..2026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:01 Download gff for
BS27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 640533..640736 | 1046..1249 | 100 | <- | Minus |
| 4 | 642276..642428 | 893..1045 | 100 | <- | Minus |
| 4 | 642492..642728 | 656..892 | 100 | <- | Minus |
| 4 | 643989..644155 | 489..655 | 100 | <- | Minus |
| 4 | 645949..646182 | 255..488 | 100 | <- | Minus |
| 4 | 646233..646394 | 93..254 | 100 | <- | Minus |
| 4 | 646445..646515 | 22..92 | 100 | | Minus |
| 4 | 639581..640048 | 1559..2026 | 100 | <- | Minus |
| 4 | 640107..640211 | 1454..1558 | 100 | <- | Minus |
| 4 | 640273..640476 | 1250..1453 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:33 Download gff for
BS27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 666859..667020 | 93..254 | 100 | <- | Minus |
| arm_4 | 667071..667141 | 22..92 | 100 | | Minus |
| arm_4 | 663118..663354 | 656..892 | 100 | <- | Minus |
| arm_4 | 664615..664781 | 489..655 | 100 | <- | Minus |
| arm_4 | 660207..660674 | 1559..2026 | 100 | <- | Minus |
| arm_4 | 660733..660837 | 1454..1558 | 100 | <- | Minus |
| arm_4 | 660899..661102 | 1250..1453 | 100 | <- | Minus |
| arm_4 | 661159..661362 | 1046..1249 | 100 | <- | Minus |
| arm_4 | 662902..663054 | 893..1045 | 100 | <- | Minus |
| arm_4 | 666575..666808 | 255..488 | 100 | <- | Minus |
BS27530.pep Sequence
Translation from 16 to 2025
> BS27530.pep
MLIASGFLLFQFLSYGLGVPPLVRIGAIFSNQPGMYNSELAFRYAIHRLN
MDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIRVGVQAVFSPTDSVLA
THINSICDALDIPNIGRSAHDFSINVYPSKQLVNYAFNDVIQYLNWTRFG
ILHEKENGIINLHQLSRSFHGEVHMRQVSRDSYVSALNEFKGKEIHNIII
DTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDLEDFKYNFVNITS
FRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFD
SVYVFAIGLQTLEQSHSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLT
GPIQFKDGQRVQFKLDLIKLKQHSIVKVGEWTPHGHLNITEPSMFFDAGS
MNVTLVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYI
LDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDF
TKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIY
IVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPR
AMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTE
ISYGTLDSGSTMTFFRVCN*
BS27530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9935-PA | 669 | CG9935-PA | 1..669 | 1..669 | 3490 | 100 | Plus |
| CG9935-PB | 899 | CG9935-PB | 1..666 | 1..666 | 3471 | 100 | Plus |
| CG9935-PD | 898 | CG9935-PD | 1..665 | 1..666 | 3454 | 99.8 | Plus |
| CG11155-PD | 910 | CG11155-PD | 23..688 | 3..666 | 1827 | 52.4 | Plus |
| CG11155-PA | 910 | CG11155-PA | 23..688 | 3..666 | 1827 | 52.4 | Plus |
