BS27532.complete Sequence
1016 bp assembled on 2011-09-12
GenBank Submission: KX803769
> BS27532.complete
GAAGTTATCAGTCGACATGCAAAAGCCAGCGCTTAAACTGCGTCGACTCT
TCATCATTACCGCAATTTATATAGCCAGTTTGCCAGGTCTCACTGTTGGG
CTGCGGAACGTCAACGTTCGCATACCGTCCGCCGTTAAGCGTGGCGATAA
TGCGCTCTTAATCTGCAATTATGACATCGAGAACGACACGCTCTACACGG
TGAAATGGTATCGTGGCAGACGGGAGTTCTACCGCTATACGCCCAAGGAA
AATCCGGCCTGGAAGATATTCACCAAAACGAACGAAATCGATGTCGAGAC
TGCCCAATCGAATGCCAGCCACGTTCTTTTGCGAAATGTTCCCACCTCAA
TATCGGGCAAATTTGCCTGCGAAGTGTCCGCAGATGCACCCACCTTCGAT
ACTTCCATCGTGGCCGCCGACATGGAGGTGGTTGAATTGCCCACCCAACG
ACCCATAATTACTGGCATCCATTCAAGATACCGTCTGGGGGACGTTATAA
ATGGGAACTGCTCATCGGATTACTCCAAGCCGGCTGCGAATCTCACCTGG
TGGATCAATGACATACAGGTGCCACCCAATTATCTCCGCATCTACGACAT
TCAGCGGCACGTGGCCGAGCATCTGGAGTCGGCGGTTTTGGAGATCAAAT
TCGTGGTGACGGTACATCACTTCATCAAGAGTCGCTTAAAGTTGAAATGT
TCGGCAAGGATACACGAAATTTACGCACAGGAGAGCGAAAAATTAATCGA
GGAAGATCGTCCCAGGATTCTGGCCTCTGGCAGATCACCTGATATGAATA
TGTATCCATTTGATCAGCCAGGGGATGCAGATGAGCATAACGAACTATTT
TTGATCCATTCAAATGCGGCTTGCGGACCATTTGCCTGGCATCCGATTTT
GTTTTTGCTGTTGTGGCCAAGTTTCTGGGTTTTCGCCGCCTGGGAGAACT
GGCTGTGGAACCTGTTGGAGGCTCGACTTTTTGGCAGGGCGGTGCGGTGA
AAGCTTTCTAGACCAT
BS27532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Ib-RB | 984 | CG7644-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| beat-Ib-RA | 984 | CG7644-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
| beat-Ic-RC | 1605 | CG4838-PC | 217..326 | 149..258 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Ib-RB | 2611 | CG7644-RB | 1085..2068 | 17..1000 | 4920 | 100 | Plus |
| beat-Ib-RA | 2603 | CG7644-RA | 1077..2060 | 17..1000 | 4920 | 100 | Plus |
| beat-Ic-RC | 4695 | CG4838-RC | 1134..1243 | 149..258 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15906549..15906806 | 691..434 | 1290 | 100 | Minus |
| 2L | 23513712 | 2L | 15908067..15908286 | 298..79 | 1085 | 99.5 | Minus |
| 2L | 23513712 | 2L | 15906318..15906491 | 863..690 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 15905677..15905818 | 1000..859 | 695 | 99.3 | Minus |
| 2L | 23513712 | 2L | 15906864..15907001 | 434..297 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 15939362..15939433 | 88..17 | 360 | 100 | Minus |
| 2L | 23513712 | 2L | 16032442..16032551 | 149..258 | 190 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:56 has no hits.
BS27532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:15 Download gff for
BS27532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RB | 1082..2064 | 17..999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:33 Download gff for
BS27532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RA | 1077..2059 | 17..999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:40 Download gff for
BS27532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RA | 1077..2059 | 17..999 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:40 Download gff for
BS27532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15906318..15906489 | 692..863 | 100 | <- | Minus |
| 2L | 15906549..15906805 | 435..691 | 100 | <- | Minus |
| 2L | 15906864..15906999 | 299..434 | 100 | <- | Minus |
| 2L | 15908067..15908278 | 87..298 | 100 | <- | Minus |
| 2L | 15939364..15939433 | 17..86 | 100 | | Minus |
| 2L | 15905678..15905813 | 864..999 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:33 Download gff for
BS27532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15906864..15906999 | 299..434 | 100 | <- | Minus |
| arm_2L | 15908067..15908278 | 87..298 | 100 | <- | Minus |
| arm_2L | 15939364..15939433 | 17..86 | 100 | | Minus |
| arm_2L | 15905678..15905813 | 864..999 | 100 | <- | Minus |
| arm_2L | 15906318..15906489 | 692..863 | 100 | <- | Minus |
| arm_2L | 15906549..15906805 | 435..691 | 100 | <- | Minus |
BS27532.pep Sequence
Translation from 16 to 999
> BS27532.pep
MQKPALKLRRLFIITAIYIASLPGLTVGLRNVNVRIPSAVKRGDNALLIC
NYDIENDTLYTVKWYRGRREFYRYTPKENPAWKIFTKTNEIDVETAQSNA
SHVLLRNVPTSISGKFACEVSADAPTFDTSIVAADMEVVELPTQRPIITG
IHSRYRLGDVINGNCSSDYSKPAANLTWWINDIQVPPNYLRIYDIQRHVA
EHLESAVLEIKFVVTVHHFIKSRLKLKCSARIHEIYAQESEKLIEEDRPR
ILASGRSPDMNMYPFDQPGDADEHNELFLIHSNAACGPFAWHPILFLLLW
PSFWVFAAWENWLWNLLEARLFGRAVR*
BS27532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Ib-PB | 327 | CG7644-PB | 1..327 | 1..327 | 1741 | 100 | Plus |
| beat-Ib-PA | 327 | CG7644-PA | 1..327 | 1..327 | 1741 | 100 | Plus |
| beat-Ic-PC | 534 | CG4838-PC | 40..338 | 12..302 | 820 | 51.2 | Plus |
| beat-Ic-PB | 534 | CG4838-PB | 40..338 | 12..302 | 820 | 51.2 | Plus |
| beat-Ic-PA | 534 | CG4838-PA | 40..338 | 12..302 | 820 | 51.2 | Plus |
