BS27534.complete Sequence
1436 bp assembled on 2011-09-12
GenBank Submission: KX805477
> BS27534.complete
GAAGTTATCAGTCGACATGAGTTCCACCGGCGGTGACAAATACCAATATC
TAGCTGCAATCAGTGTAAACATCATTTCGATTTCGTATGGCGCTTTTTGC
GGATGGCCATCGTCCAGTTTCCTGGAATTGTCATCAGAAAATAGTCCTTT
GGATACGGGTCCTTTGACGCCAACGGATCAGGGATGGGTGGCGTCGAATA
TATGCCTGGGAGGCCTGGTGGGCACCTTTCTGTTTACCTGGCTGGCGGAC
AGAATCGGCAGGAAATTGTGTCTCATGTGGATGGCGCTGCCCAATTTGCT
AGGCTGGGTGATAATACCGTTCGCGCGCACTCCCATGCATTTAATTATCG
CTAGATTTATTGGTGGAGCCGCTGGCGGTGGATGTTTCACAGTGATTCCC
ATTTATATAGCCGAGTTAGCCTCGGACAATATTCGCGGCATTTTGGGCGT
CTTTTTGGTGCTGACCTGCAATTTCGGTCTCGTGCTGGCCTTCGTCCTTG
GCTACTACTTCAACTATGCCCAAGTGTCCTGGATTGTGTCCTCGCTGTCC
TTTGTGTTCGTCGGCTGTTTCTGGTTCATGCCGGAAACACCGCAGCACCT
GGCCAAGATAAACAAGATTGAGGAGGCGGAGCATTCGCTGCGCTACTACC
GGAACATCAAGTCTAATCCGGCCAAGGAACTCAGCGAGGAGCTGCAACTG
GAGCTTCAGAAGTTAAAGACCACCGAGAAGACCACTGCGGATGGAGTTGA
TGACGATGACGCGGCCACCGGCGTAACTTGGTCCGACTTCGCTGAGGGCA
AGACTCGAAAGGCATTCCTAATCGGACTCGGACTGATAAGCTTCAATCAG
CTGTGCGGATGCTTCGCCATGCTGAACTATACGGCCGTAATTTTCGAGCA
AGCTGGCTCCAGCCTTCCGCCCACAGTGGCCGCCATCATAGTGGGTGTCA
TCCAACTAATGGGCACCTATGCATCCACCGTTTTGGTGGAGCGACTGGGC
CGTAAGATCCTGCTCCTGGTCTCTGCGGTGGGAATCGGATTGGGCCAGAG
TGCGATGGGCACGTATAGCTACTTCCAGATGCTCGGATGCCCAGTGGCAT
CGTTCAGCTGGGTGCCCATCGCTGGGTTCTCCTTCATGCTGTTCCTGGCT
GCAGTCGGACTGCTCTCCCTGCCATTCCTGGTGGTATCGGAAATAATGCC
GCAGAAGATAAGGAGCACGGCCATCATGATTCTAATGTCGACACTCTGGT
TAATTTCCACCTGCGCCGTAAAGTTGATGCCGGTTTTCACTGAATCCCTA
GGAATGCACGGAACCGTCTTCATGTTTGCCAGCTTATCCTTCCTAGCAGC
AATTTTCATCGCTATTTTCGTGCCCGAAACCAAGGGCAAGTCAGTTGATG
CCATCTTGGCCAGTCTCTAGAAGCTTTCTAGACCAT
BS27534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33281-RA | 1404 | CG33281-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33281-RA | 1594 | CG33281-RA | 131..1534 | 17..1420 | 7020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3325881..3326363 | 791..1273 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 3325121..3325487 | 430..796 | 1820 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3324648..3324881 | 65..298 | 1170 | 100 | Plus |
| 2L | 23513712 | 2L | 3326429..3326577 | 1272..1420 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 3324936..3325067 | 298..429 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3324367..3324415 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:05 has no hits.
BS27534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:13 Download gff for
BS27534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 134..1537 | 17..1420 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:25 Download gff for
BS27534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 131..1534 | 17..1420 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:48 Download gff for
BS27534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 131..1534 | 17..1420 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:48 Download gff for
BS27534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3324937..3325067 | 299..429 | 100 | -> | Plus |
| 2L | 3325121..3325482 | 430..791 | 100 | -> | Plus |
| 2L | 3324367..3324415 | 17..65 | 100 | -> | Plus |
| 2L | 3324649..3324881 | 66..298 | 100 | -> | Plus |
| 2L | 3325882..3326363 | 792..1273 | 100 | -> | Plus |
| 2L | 3326431..3326577 | 1274..1420 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:25 Download gff for
BS27534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3324937..3325067 | 299..429 | 100 | -> | Plus |
| arm_2L | 3324367..3324415 | 17..65 | 100 | -> | Plus |
| arm_2L | 3324649..3324881 | 66..298 | 100 | -> | Plus |
| arm_2L | 3325121..3325482 | 430..791 | 100 | -> | Plus |
| arm_2L | 3325882..3326363 | 792..1273 | 100 | -> | Plus |
| arm_2L | 3326431..3326577 | 1274..1420 | 100 | | Plus |
BS27534.pep Sequence
Translation from 16 to 1419
> BS27534.pep
MSSTGGDKYQYLAAISVNIISISYGAFCGWPSSSFLELSSENSPLDTGPL
TPTDQGWVASNICLGGLVGTFLFTWLADRIGRKLCLMWMALPNLLGWVII
PFARTPMHLIIARFIGGAAGGGCFTVIPIYIAELASDNIRGILGVFLVLT
CNFGLVLAFVLGYYFNYAQVSWIVSSLSFVFVGCFWFMPETPQHLAKINK
IEEAEHSLRYYRNIKSNPAKELSEELQLELQKLKTTEKTTADGVDDDDAA
TGVTWSDFAEGKTRKAFLIGLGLISFNQLCGCFAMLNYTAVIFEQAGSSL
PPTVAAIIVGVIQLMGTYASTVLVERLGRKILLLVSAVGIGLGQSAMGTY
SYFQMLGCPVASFSWVPIAGFSFMLFLAAVGLLSLPFLVVSEIMPQKIRS
TAIMILMSTLWLISTCAVKLMPVFTESLGMHGTVFMFASLSFLAAIFIAI
FVPETKGKSVDAILASL*
BS27534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33281-PA | 467 | CG33281-PA | 1..467 | 1..467 | 2395 | 100 | Plus |
| CG14606-PB | 438 | CG14606-PB | 1..434 | 20..458 | 710 | 34.7 | Plus |
| CG14606-PA | 438 | CG14606-PA | 1..434 | 20..458 | 710 | 34.7 | Plus |
| CG15406-PA | 469 | CG15406-PA | 18..467 | 10..460 | 689 | 33.9 | Plus |
| CG15408-PA | 466 | CG15408-PA | 17..463 | 7..460 | 659 | 31.2 | Plus |
