BS27535.complete Sequence
1238 bp assembled on 2011-09-12
GenBank Submission: KX805846
> BS27535.complete
GAAGTTATCAGTCGACATGAGTGCCGAAAAATGGGAAAAGAACGAGGAAA
TTCGAATATTCCGGGAGTATTTGCGAATTCCATCTGTACACCCTAATATT
GATTATACTGCTTGTGTGGAGTTTATTAAGCGGCAGGCAGATTCCCTCAA
TCTGCCCGTGGAAGTAGTTTTTCCAGCTGTTAAATCAAAACCTGTGGTGA
TCATTAAATGGGAAGGAAGCCAGCCAAAGTTGCCCTCAATCATTTTAAGC
TCGCACATGGACGTGGTTCCTGTATTCCCGGAAATGTGGACCCATGAACC
CTTCTCCGCCGACATCGACGAGGAGGGTAGGATCTTTGCACGAGGTGCTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCTATACGCCTGCTG
AGGGCTGATGGCTTTCAGCCGAAAAGGACGCTCTATGTAACCTTTGTTCC
TGACGAGGAGATTGGAGGCATCCATGGCATGGCAGCGTTCGTTGAAACTG
ACTTTTACAAACAAATGAATGTGGGATTCAGCTTGGACGAGGGTGGAACT
AGTGCTTCTGATGTTCATCACTTGTTCTACGCCGAGCGTATACGATGGAT
TCTCAAATTGAAAGTTGCTGGAACCGCCGGTCATGGTTCTCTATTGTTGC
CCGATACAGCCGGAGTTAAGTTGAACTATGTGTTGAACAAGCTGACGGAG
TTCCGTGAATCGCAAATCCAGCGACTGAAAAACGACAAAAGCCTGAGCAT
CGGGGATGTGACCACGGTGAATCTCACCCAGTTGAGTGGCGGAGTGCAGA
GCAATGTGGTTCCACCGCTTTTTGAGGCCATTTTCGACATACGTCTAGCC
ATAACCCTGGATTTGGTTGCATTTGAGCGGGAAATTCGAAATTGGTGCGA
GGAGGCAGGTGGAGGCATTGACATCGAGTTCCCACTGAAAGAGGCCTATG
TGGCGGCCACCAGGCTGGATGATTCAAACCCCTATTGGTTAGCTTTGAAA
GTCGCTCTGGATGAACTGGGTCTTAAAGTTAAGCCGATAGTGTGTTTTGC
AGTCACCGATTGTCGTTTTATTCGCCAGCAGGGAACCCCAGCAATTGGTT
TCTCACCCATCATAAACACTACAGTACTAATCCATGACCATGATGAATTT
TTAAGGGCTGATGATTATTTGAATGGCATACAAGTTTACAAGAAGATTAT
TCCTAATCTCACTGAAGTCTAGAAGCTTTCTAGACCAT
BS27535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6738-RA | 1206 | CG6738-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| CG6733-RA | 1206 | CG6733-PA | 10..1205 | 26..1221 | 1690 | 76.1 | Plus |
| CG17109-RB | 1203 | CG17109-PB | 1..906 | 17..925 | 835 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6738-RA | 1291 | CG6738-RA | 42..1247 | 17..1222 | 6030 | 100 | Plus |
| CG6733-RA | 1291 | CG6733-RA | 26..1236 | 11..1221 | 1705 | 76.1 | Plus |
| CG17109-RB | 1373 | CG17109-RB | 44..949 | 17..925 | 835 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23099719..23100210 | 108..599 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 23100264..23100682 | 600..1018 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 23100735..23100939 | 1018..1222 | 1025 | 100 | Plus |
| 3R | 32079331 | 3R | 23097907..23098397 | 108..598 | 820 | 77.8 | Plus |
| 3R | 32079331 | 3R | 23098460..23098876 | 602..1018 | 525 | 75.1 | Plus |
| 3R | 32079331 | 3R | 23096451..23096757 | 619..925 | 455 | 76.5 | Plus |
| 3R | 32079331 | 3R | 23099574..23099664 | 17..107 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 23095963..23096326 | 191..554 | 425 | 74.5 | Plus |
| 3R | 32079331 | 3R | 23098977..23099136 | 1062..1221 | 305 | 79.4 | Plus |
| 3R | 32079331 | 3R | 23092756..23092922 | 755..921 | 235 | 76 | Plus |
| 3R | 32079331 | 3R | 23092179..23092417 | 231..469 | 205 | 72.4 | Plus |
| 3R | 32079331 | 3R | 23093972..23094091 | 250..369 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:28 has no hits.
BS27535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:13 Download gff for
BS27535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6738-RA | 39..1244 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:42 Download gff for
BS27535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6738-RA | 42..1247 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:58 Download gff for
BS27535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6738-RA | 42..1247 | 17..1222 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:58 Download gff for
BS27535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23099574..23099664 | 17..107 | 100 | -> | Plus |
| 3R | 23099719..23100210 | 108..599 | 100 | -> | Plus |
| 3R | 23100264..23100681 | 600..1017 | 100 | -> | Plus |
| 3R | 23100735..23100939 | 1018..1222 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:42 Download gff for
BS27535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18925296..18925386 | 17..107 | 100 | -> | Plus |
| arm_3R | 18925441..18925932 | 108..599 | 100 | -> | Plus |
| arm_3R | 18925986..18926403 | 600..1017 | 100 | -> | Plus |
| arm_3R | 18926457..18926661 | 1018..1222 | 100 | | Plus |
BS27535.pep Sequence
Translation from 16 to 1221
> BS27535.pep
MSAEKWEKNEEIRIFREYLRIPSVHPNIDYTACVEFIKRQADSLNLPVEV
VFPAVKSKPVVIIKWEGSQPKLPSIILSSHMDVVPVFPEMWTHEPFSADI
DEEGRIFARGAQDMKSVGTQYLGAIRLLRADGFQPKRTLYVTFVPDEEIG
GIHGMAAFVETDFYKQMNVGFSLDEGGTSASDVHHLFYAERIRWILKLKV
AGTAGHGSLLLPDTAGVKLNYVLNKLTEFRESQIQRLKNDKSLSIGDVTT
VNLTQLSGGVQSNVVPPLFEAIFDIRLAITLDLVAFEREIRNWCEEAGGG
IDIEFPLKEAYVAATRLDDSNPYWLALKVALDELGLKVKPIVCFAVTDCR
FIRQQGTPAIGFSPIINTTVLIHDHDEFLRADDYLNGIQVYKKIIPNLTE
V*
BS27535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6738-PA | 401 | CG6738-PA | 1..401 | 1..401 | 2080 | 100 | Plus |
| CG6733-PA | 401 | CG6733-PA | 1..401 | 1..401 | 1700 | 79.3 | Plus |
| CG17109-PB | 400 | CG17109-PB | 1..400 | 1..401 | 1565 | 72.8 | Plus |
| CG17109-PA | 400 | CG17109-PA | 1..400 | 1..401 | 1565 | 72.8 | Plus |
| CG6726-PC | 401 | CG6726-PC | 1..400 | 1..400 | 1480 | 66.5 | Plus |
