BS27537.complete Sequence
1868 bp assembled on 2011-10-21
GenBank Submission: KX803663
> BS27537.complete
GAAGTTATCAGTCGACATGCTCGCGTACACCCACGGCACATGGCTCCTGC
TCCTGCTGCTCCTTGTAGCAGGCGCATGCGCGCGGCCAGAAATAGCACAC
ACACCGGATCCGGCTGCACTAGGCGAGGAGTCTACTCCACATGCACACGC
ACATCCACAGGCTCGCCATCATCACCATGCCCATCCCCATGCGCCGCTGA
AGGAAGATGAGCAGGGAACAGCAATACCTGCTCCCATCCTAACAACTGAT
AACGTGGGCATTGGGGAAACCACGACGGCATCAAGTTTGGCCGAGACGCA
AAGCATGTCCGATCCGGGATCTGTGACAGACACAACATCCACAAGCACAT
CGCACTCCACCTCGACCACGTCGACCACTTCGCCCGCACCCCTTCCGCCG
GCTGCTCCCGAACAGCCCGAGTATCTGAAGCACTGCTTCTATGCAGAAGA
GCAGCTGTGTGGCCACACCTTTGACGGACGAGCCGAAACCTCCGAGGGCC
AGGGCTCGACAGTCGCGCAGTCGGAAGCCCAGAACCGAGGAGGACAGGGG
AACAGCCAGTGCCAGTGCAGGGAGCACCCGACGCGGCCAAACTCCTGGTA
CTGCTGCAACATATCGCAGCTGACGATGATCTCAAGCTGCAGCAACATAT
CCAAGTGGACCAACCTGCACGTGCGCAACATGACTGTGGAGGACATGGAC
CTCTCCAATCCAATATTCCGATCCCTGCAGTCGCTTGCCGTGACGGACGG
CAATATCACTCGACTGGTGAACGCCTTTCCGCGGCTCTCGGCTCTTAAGT
GCCTAAACATATCAAACAACAACATCTCGGAGATCCACTCGAGGGCGGTG
AAGGACGTGCCCCATCTGGAGTTCTTCGGCATGTCGAACAACAATCTCTC
GCTGGTGCCTCACCGAAACCAGAACAAGAACATTACGCTGGATATCAGTG
GCAACATGCGCATGCTGTGCACTCCGCTAAACGAGATAATATACACCGAA
TCTATTAATTTCCTGAACCCGAAGCACTCCTACTGTCAGTATAACGCCAC
ACACACCTGGTTTCAGTCCACGGACAAGGTGTCCGTGGAGCAGCTGGAGA
ACAGAAAGCGGTGTGTGACTAATTGTCCGGTTATTCCGAACTACGGCAGC
TGCAATTGTACGCTGGAGAATATTATGATCATACAGGACAACCAGTCGAA
GCCCCAGTGCCACGTAGACTGTTCCAATCTTGGCCTGGTGGAGCTACCCC
AAAGACTGCCGGACAACACATTTATGCTCAATATCACAAACAACAAGATA
ACCAGCCTGGGCGATTACTTCCATACCAATCCCACCTACCACAATATTAA
CCGTCTCTTGGCCGATAACAACCAGATATCCTCCATCTATGAGTTCGAGG
GTACCAAGTTCATCGAAACCTTTCAGCGCATCTACATGCGAAACAATTCG
CTGAGCAAGATTCCGGAGTACTTTCTCAACAATGCCCTGATGGACTCTGG
CCTGGGCCGTCGTATTTACCTGGCAGGCAACAAGCTGCAGTGCGACTGCA
ACTCGGCAAAGACGCTGCAAAATTGGCTTAAGGAGCGTAGCTCCGATATA
CCCGACTATATGGAGATACGCTGTCGCAACATGCCCCAGAGAGTCATCGA
ACTGCAGGAGGCCAAACTATGCCAGTCCCCACCAGACTGGACCGATTACA
TATACTATTTAATAGCCGCCGAGGTCCTGCTGCTGCTCGCCCTTATTACC
AAGGTGTCCTACGACTATTGGGTCTTCAAGACGGCTGGCTATCTGCCCTG
GCCGGCCAGTAAAATGCCCAAGTTGCCATGCGATTGGCTGTGCGAATCGT
AGAAGCTTTCTAGACCAT
BS27537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hfw-RB | 1836 | CG3095-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| hfw-RA | 1836 | CG3095-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hfw-RB | 3038 | CG3095-RB | 347..2187 | 13..1853 | 9205 | 100 | Plus |
| hfw-RA | 2540 | CG3095-RA | 347..2187 | 13..1853 | 9205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1670816..1671729 | 35..948 | 4570 | 100 | Plus |
| X | 23542271 | X | 1671783..1672297 | 945..1459 | 2575 | 100 | Plus |
| X | 23542271 | X | 1672362..1672757 | 1458..1853 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:27:32 has no hits.
BS27537.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:16:43 Download gff for
BS27537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 328..2163 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:50 Download gff for
BS27537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 351..2186 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:44 Download gff for
BS27537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 351..2186 | 17..1852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:44 Download gff for
BS27537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1669920..1669937 | 17..34 | 100 | -> | Plus |
| X | 1670816..1671729 | 35..948 | 100 | -> | Plus |
| X | 1671787..1672297 | 949..1459 | 100 | -> | Plus |
| X | 1672364..1672756 | 1460..1852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:50 Download gff for
BS27537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1563953..1563970 | 17..34 | 100 | -> | Plus |
| arm_X | 1564849..1565762 | 35..948 | 100 | -> | Plus |
| arm_X | 1565820..1566330 | 949..1459 | 100 | -> | Plus |
| arm_X | 1566397..1566789 | 1460..1852 | 100 | | Plus |
BS27537.pep Sequence
Translation from 16 to 1851
> BS27537.pep
MLAYTHGTWLLLLLLLVAGACARPEIAHTPDPAALGEESTPHAHAHPQAR
HHHHAHPHAPLKEDEQGTAIPAPILTTDNVGIGETTTASSLAETQSMSDP
GSVTDTTSTSTSHSTSTTSTTSPAPLPPAAPEQPEYLKHCFYAEEQLCGH
TFDGRAETSEGQGSTVAQSEAQNRGGQGNSQCQCREHPTRPNSWYCCNIS
QLTMISSCSNISKWTNLHVRNMTVEDMDLSNPIFRSLQSLAVTDGNITRL
VNAFPRLSALKCLNISNNNISEIHSRAVKDVPHLEFFGMSNNNLSLVPHR
NQNKNITLDISGNMRMLCTPLNEIIYTESINFLNPKHSYCQYNATHTWFQ
STDKVSVEQLENRKRCVTNCPVIPNYGSCNCTLENIMIIQDNQSKPQCHV
DCSNLGLVELPQRLPDNTFMLNITNNKITSLGDYFHTNPTYHNINRLLAD
NNQISSIYEFEGTKFIETFQRIYMRNNSLSKIPEYFLNNALMDSGLGRRI
YLAGNKLQCDCNSAKTLQNWLKERSSDIPDYMEIRCRNMPQRVIELQEAK
LCQSPPDWTDYIYYLIAAEVLLLLALITKVSYDYWVFKTAGYLPWPASKM
PKLPCDWLCES*
BS27537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hfw-PB | 611 | CG3095-PB | 1..611 | 1..611 | 3300 | 100 | Plus |
| hfw-PA | 611 | CG3095-PA | 1..611 | 1..611 | 3300 | 100 | Plus |
| swi2-PA | 499 | CG14485-PA | 132..499 | 237..601 | 286 | 25.7 | Plus |
