BS27538.complete Sequence
1922 bp assembled on 2011-10-14
GenBank Submission: KX800742
> BS27538.complete
GAAGTTATCAGTCGACATGAAAGATTTGAAAACGGAGATCCTAGTGAGCG
GCGGCCTGCCGAAACTGGAGACCAGCAGGTGTGCCGGCAGTGGCGAGGCG
CTGCTAAAGCCATCCTTGCTGCCCATGGCATTGGAATCGTCTGAGCTCTC
TCCGGATCGGAAGGCCCGCGACAACTGGGGCAGTTCGCTGGAGTTCCTGA
TGTCCTGCATCGCCCTGAGCGTGGGATTAGGCAACGTGTGGCGGTTTCCA
TTTACGGCCCTGGAAAACGGCGGAGGGGCATTCCTAATTCCGTACCTCGT
CGTCCTGTTTGTGGTGGGAAAGCCGATTTACTACATGGAGATGCTGCTGG
GACAGTTCTCCAGTCGTGGCATCGTGCAGGTCTTTGACTTTGCGCCCCTC
ATGAGAGGTGTGGGCTATGCTCAGCTATTGGCCCTAGGCGTTTTGGCCAC
GTATTATGCTTCAGTGATGGCCCTAACTCTGCGATACTTTTTCGATTCCT
TCGCATCGGAGTTGCCCTGGAGCTTCTGTCGCGAGGAGTGGGGTGACGGG
TGCGTAAGTGCATCTGGGGGGCAGCCTCTTCAGGGCCAACTGTCGCGTAA
CTTCAGCTCCTCCACGCAACTCTACTTGCAACGCATCGTGCTGAATGAAA
CGGATTCCCTGGAGGAGGGCATCGGATATCCCAGTGGTAGTTTGGCCTTA
ATGCTGGGCATTTCGTGGCTAACCGTAACACTAATCATCATTCGGGGAGT
GAAGAGTTCAGGAAAGGCGGCCTATGTCCTGGCCCTCTTTCCGTACGTTG
TAATGTTTATCCTGCTCGTGAGAGCACTCACATTACCAGGTGCCTACGAC
GGAGTTATGTACTTTCTGACTCCACAGTGGGAGAAACTTTTGGAGCCGCA
GGTGTGGTACAATGCCGTCACCCAGGTGTTCTTCTCCCTGGCCGTCTGTT
TCGGTGTGATCATCATGTACTCCTCGTACAACCGTTTCGGTCACAATGTC
TATCGGGATGCCAATATAGTAACCACCCTGGACACATTCACCTCACTGCT
CTCGGGTGTGATTATCTTTGGAATCCTGGGAAACCTGGCTCACGAATCGG
GCACCAAGGACATTGCCAGTGTGGTTAAGGCAGGTCCTGGATTGGCTTTC
ATCTCCTATCCGGATGCCATTGCCAAGTTCAAAATGTTTCCTCAAGTGTT
TTCGCTGCTCTTCTTCGCCATGCTCTTCATGTTGGGCGTTGGTAGCAATG
TGGGCATGGTCAGCTGCATTATGACCGTGCTCAAAGATCAGTTCGTGAAC
GTCAAGCTGTGGATTATAGTGGTCAGCCTTTCGGTGATAGGATTTCTGGT
GGGATTGATTTACATCACTCCCGGAGGTCAACATATCATCACGCTTATGG
ACTTTCACGGCGTCACCTTTGTCTCCCTGGTATCGGCCATCTTTGAGCTC
ATTGCCGTGGGCTGGATCTACGGCACCAAACGTCTCTGCCAAGATGCTGA
ATACATGCTGAATATCAAGACTTCAAATTACTATCGGATCTGTTGGTCCA
TTGTTACTCCTTTGGTTATGTTGGTCATCCTGGTGTACAGCTTGCTTACC
ATGCGTCCACTCAGCTATAATGGTCAGGAATTTCCATTGGTATATAGAGT
TGTTGGTTGGTGTGTATCGGGCTGTATTATTGGCCAGCTGTTCTACTGGG
CAGGTTATGCAAACTTCAAGCAACCGAAAGGATCTTTGAAGAGTCGCATT
AACAATTCCATTAAGCCGCATTCCGATTGGGGGCCTTCGGATCCCAAAAA
GCTGATGGATTACCAAATGTTTTTGCGAAACAAGGATGAGGAAAATTCCA
AAAATGTTAATCGCCGTTGTGTTTGCTACACAGCTGGAGATCGAATTTTC
GGTTAAAAGCTTTCTAGACCAT
BS27538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4476-RB | 1890 | CG4476-PB | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| CG1698-RB | 1965 | CG1698-PB | 807..1357 | 745..1295 | 910 | 77.7 | Plus |
| CG1698-RA | 1965 | CG1698-PA | 807..1357 | 745..1295 | 910 | 77.7 | Plus |
| CG1698-RB | 1965 | CG1698-PB | 244..597 | 191..544 | 480 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4476-RB | 2400 | CG4476-RB | 347..2237 | 17..1907 | 9455 | 100 | Plus |
| CG1698-RB | 2246 | CG1698-RB | 1056..1606 | 745..1295 | 910 | 77.7 | Plus |
| CG1698-RA | 4106 | CG1698-RA | 2916..3466 | 745..1295 | 910 | 77.7 | Plus |
| CG1698-RB | 2246 | CG1698-RB | 493..846 | 191..544 | 480 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9213396..9214463 | 406..1473 | 5340 | 100 | Plus |
| 3L | 28110227 | 3L | 9212872..9213202 | 79..409 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 9214834..9215093 | 1648..1907 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 9214593..9214770 | 1472..1649 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 9795678..9795897 | 191..410 | 485 | 81.4 | Plus |
| 2R | 25286936 | 2R | 9797011..9797301 | 1005..1295 | 480 | 77.7 | Plus |
| 2R | 25286936 | 2R | 9796699..9796950 | 745..996 | 465 | 79 | Plus |
| 2L | 23513712 | 2L | 14845888..14846383 | 1237..742 | 380 | 71.8 | Minus |
| 3L | 28110227 | 3L | 9212668..9212730 | 17..79 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 14848711..14848892 | 370..189 | 310 | 78 | Minus |
| 2R | 25286936 | 2R | 18728858..18728977 | 1180..1061 | 255 | 80.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:37:54 has no hits.
BS27538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:58 Download gff for
BS27538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 343..2230 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:59 Download gff for
BS27538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 347..2234 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:16 Download gff for
BS27538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 347..2234 | 17..1904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:16 Download gff for
BS27538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9212668..9212730 | 17..79 | 100 | -> | Plus |
| 3L | 9212873..9213200 | 80..407 | 100 | -> | Plus |
| 3L | 9213398..9214462 | 408..1472 | 100 | -> | Plus |
| 3L | 9214594..9214770 | 1473..1649 | 100 | -> | Plus |
| 3L | 9214836..9215090 | 1650..1904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:59 Download gff for
BS27538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9205768..9205830 | 17..79 | 100 | -> | Plus |
| arm_3L | 9205973..9206300 | 80..407 | 100 | -> | Plus |
| arm_3L | 9206498..9207562 | 408..1472 | 100 | -> | Plus |
| arm_3L | 9207694..9207870 | 1473..1649 | 100 | -> | Plus |
| arm_3L | 9207936..9208190 | 1650..1904 | 100 | | Plus |
BS27538.pep Sequence
Translation from 16 to 1905
> BS27538.pep
MKDLKTEILVSGGLPKLETSRCAGSGEALLKPSLLPMALESSELSPDRKA
RDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVVLFVV
GKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASV
MALTLRYFFDSFASELPWSFCREEWGDGCVSASGGQPLQGQLSRNFSSST
QLYLQRIVLNETDSLEEGIGYPSGSLALMLGISWLTVTLIIIRGVKSSGK
AAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNA
VTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVII
FGILGNLAHESGTKDIASVVKAGPGLAFISYPDAIAKFKMFPQVFSLLFF
AMLFMLGVGSNVGMVSCIMTVLKDQFVNVKLWIIVVSLSVIGFLVGLIYI
TPGGQHIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKRLCQDAEYMLNI
KTSNYYRICWSIVTPLVMLVILVYSLLTMRPLSYNGQEFPLVYRVVGWCV
SGCIIGQLFYWAGYANFKQPKGSLKSRINNSIKPHSDWGPSDPKKLMDYQ
MFLRNKDEENSKNVNRRCVCYTAGDRIFG*
BS27538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4476-PB | 629 | CG4476-PB | 1..629 | 1..629 | 3266 | 100 | Plus |
| CG1698-PB | 654 | CG1698-PB | 72..654 | 49..629 | 1981 | 63.3 | Plus |
| CG1698-PA | 654 | CG1698-PA | 72..654 | 49..629 | 1981 | 63.3 | Plus |
| CG15279-PD | 633 | CG15279-PD | 39..614 | 40..606 | 1702 | 55.4 | Plus |
| CG8850-PA | 616 | CG8850-PA | 44..604 | 51..613 | 1681 | 53.4 | Plus |
