BS27540.complete Sequence
1901 bp assembled on 2013-09-16
GenBank Submission: KX800580
> BS27540.complete
GAAGTTATCAGTCGACATGTTAAATTACATCAAGAGGCACGCCAGCCGAC
GTCGCAGCAGCCAAGATGCCACGGATGCCATTTGTGGCCAAATGCCAGCG
TATGATGTGGACACCAACGACGTTGCTGGAGCTGGTGATGCAGCCAACGC
TCACAAACGACACTCGCTGCGCTCCACAACCAGTTTCTGCGACGAAGTGT
TCCTAGAAGCGGAGGAGGAGGGCGGCGTGGGAACCACAGGAGGAGGAGGA
GGAGGAGGAGGTGGTGGTGGTGGTGGAGGAGCCCCCTCCGATGGCATCAG
TCTCGCCAGCAACGATGACATTTTCACCTACAACTCACGCCTCTCCATGA
ATCTCGCTTCCATCGTCAACGATCCGAACTGCCTGAGCTACTTTGTTCAG
TATCTGGACACCCGACAGGCCCTGCCGCTGATCAAATTCTACTTGGACAT
TGAGAACTTTAAGCGGGCGGCTCTGACGCAAGAGAAGGAGGAACCAGAGG
AACCTCCTCGCAAGGCAATAGAACAATCTTCTCCGCACAAAGATGACAAA
GATGTACCTGAATTGAAGACGCTGTGCGATCTGTCAATGCGCAAACCCCT
CACAGACGACGAGAAGAGCCGCATCTATGCGGAGACCAACAAGCAGCTCA
ATAGGCAAAAGTCTGGAACGGATAGTGTGCTGAACGCCGAGCTATCGCGG
GCCAGCATCAGCGATGCCATTGCCATATACCAAAAGTATCTGATAGTGAA
CGCCAGCCTGCAAGTGGAGCTGCCCATCGTCATCCTTGCGCATATATCGC
TGCTACTTTGCGGAAGGGATAAGTCCGAGTGTAGCAAACCAATTCCGGCC
AGCTGCTTTGACGAAGCTAGAGAGTTTGTGCTGGAGCAGCTGGAGCGGGA
TCATGTGCAGGGATTTCTACAGAGCGGCTACTATTCTACATACTGTCTGG
AGTTGATCGAAGGCGGCTCTGTAAATATCTACGATGTCTTGAACAGCGAA
CTGGCTTTGTTCTACTTCACCGAGTACCTGGAGCAGCGACAAGAGCGTGA
ATGCCTGGAGTTCTGGATCACCGCCATTAACTTCCGCAAGAGCTTTGCTT
GTGGCGAGGAGAAGGAAGAGGATCGCAAGGCTGCGCAAAGCGATGCCATG
ATCATATACGACAAATACTTCTCCCTCCAGTCCGAGTGCCGTCTGTGGAT
GTCCCAGAAGCTGCGCTTACGAGTGGAACAAGCGATCTGTGCTCCGAATG
AGCAGTGGCAAGCCTTCGATTTGGCCCTCTTGGTGACGGCCAAGTATCTG
GAGCAAAAGTATTTCGCTGACTTTCTAAAGTCGCACATCTTCGATAACTA
CGTGAACGAACTGAAGGTCAAGAGAGATAATTCCACCACTCATCCGAATC
TCCAGCACACGCTGAGCTTGCGAAGAGCTGGCAAGTCCTCCAATGGCCAA
CAACAGCGACATCGAAAAACTCTATCCATGTCAGACTGCACGCACATTTC
GCAGCACAACACACTGCTGGCTTCCATGGATCAGGCGCCGTCCAAAACAG
CGCTAAATCATCAGTCGGGAAATCTCAACATCGATGCTAGGCAGCTAACG
AATCCACAACTTTTGTGGCAGCGTCCTGTGGGCGCACTGAAATTCGGTTT
TGTTAACTCCTTGGGACGCTACGAGCGGGATTTTGAGGCCGTGGACGCAG
TGGCTCTGAAATCGCAGCCGTGGTCACTGAGCGTCAGCGGTAGCAAGCTG
AAAAATGCCATGCGAAAGCTGGTGAACCTGCCGGAGGATAATGTGCAAGA
GGAGATAGCCTGGCAGGTGGCCGAAATGATTGTCCGGGATGTTACGAGTG
TCACTCTTAGTGGCAAGACTCCTCCGCTGGCCTGAAAGCTTTCTAGACCA
T
BS27540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pkaap-RA | 1869 | CG4132-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pkaap-RA | 2439 | CG4132-RA | 155..2023 | 17..1885 | 9345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16289142..16290201 | 317..1376 | 5300 | 100 | Plus |
| 2L | 23513712 | 2L | 16290269..16290779 | 1375..1885 | 2555 | 100 | Plus |
| 2L | 23513712 | 2L | 16288600..16288872 | 45..317 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:05:37 has no hits.
BS27540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:48 Download gff for
BS27540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pkaap-RA | 160..2022 | 22..1884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:05 Download gff for
BS27540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pkaap-RA | 160..2022 | 22..1884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:05 Download gff for
BS27540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16288600..16288872 | 45..317 | 100 | -> | Plus |
| 2L | 16288449..16288471 | 22..44 | 100 | -> | Plus |
| 2L | 16289143..16290201 | 318..1376 | 100 | -> | Plus |
| 2L | 16290271..16290778 | 1377..1884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:48 Download gff for
BS27540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16288449..16288471 | 22..44 | 100 | -> | Plus |
| arm_2L | 16288600..16288872 | 45..317 | 100 | -> | Plus |
| arm_2L | 16289143..16290201 | 318..1376 | 100 | -> | Plus |
| arm_2L | 16290271..16290778 | 1377..1884 | 100 | | Plus |
BS27540.pep Sequence
Translation from 16 to 1884
> BS27540.pep
MLNYIKRHASRRRSSQDATDAICGQMPAYDVDTNDVAGAGDAANAHKRHS
LRSTTSFCDEVFLEAEEEGGVGTTGGGGGGGGGGGGGGAPSDGISLASND
DIFTYNSRLSMNLASIVNDPNCLSYFVQYLDTRQALPLIKFYLDIENFKR
AALTQEKEEPEEPPRKAIEQSSPHKDDKDVPELKTLCDLSMRKPLTDDEK
SRIYAETNKQLNRQKSGTDSVLNAELSRASISDAIAIYQKYLIVNASLQV
ELPIVILAHISLLLCGRDKSECSKPIPASCFDEAREFVLEQLERDHVQGF
LQSGYYSTYCLELIEGGSVNIYDVLNSELALFYFTEYLEQRQERECLEFW
ITAINFRKSFACGEEKEEDRKAAQSDAMIIYDKYFSLQSECRLWMSQKLR
LRVEQAICAPNEQWQAFDLALLVTAKYLEQKYFADFLKSHIFDNYVNELK
VKRDNSTTHPNLQHTLSLRRAGKSSNGQQQRHRKTLSMSDCTHISQHNTL
LASMDQAPSKTALNHQSGNLNIDARQLTNPQLLWQRPVGALKFGFVNSLG
RYERDFEAVDAVALKSQPWSLSVSGSKLKNAMRKLVNLPEDNVQEEIAWQ
VAEMIVRDVTSVTLSGKTPPLA*
BS27540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pkaap-PA | 622 | CG4132-PA | 1..622 | 1..622 | 3220 | 100 | Plus |
