BS27543.complete Sequence
1574 bp assembled on 2011-09-12
GenBank Submission: KX802473
> BS27543.complete
GAAGTTATCAGTCGACATGGTGTCGCGTCGAAAAATTCTATCACGTTCCC
GCGACGATCTTAATCTCGACCAGACGTTCACCCAGCAGGAGGAGGAGGAG
GATATCTGGTTCCAGAAGGATAAACTATACAAGGAGCACATTCAGGAAGT
GCTGGACAAATGGACCCAAATCGACGACGAGATCTGGGCCAAAGTGATCG
TCTTCGAGCGGAATCGTCGCGTGGCCAAAGCGTACGCACGCGCCCCAGTG
CTGACCATTAATGGATCCGACGATGGCTTCGACGGCATGCGAATTGGACT
GTGCGGCTTCGACAATCCGATGAGGGATCAGAAGACCGACGAGATGAAGC
GCGTCATCGGACAGGGTGTTAAAATCAAAATGGATGACGCTGGGAACATC
CTCATCCGGCGGTACGCCAAAAGCAATGTCTACGTGAAGAGTACCGCCAG
CAGTCCCAACGAGGAGACCTCCATCGGTGCCGAGATCTTAAAGCTGCCAA
ATCAGGCGCTCGAATCCGAAAAAATAGTCAAGCTCTTCGACATGAAGAAG
TTCCAGTCGAATGTGAATCGAGAACTGCGTCGCGCCTATCCGGATCGCCG
CCGCTTGGAGACGCAGTGCCTCTCCGCGGTGGCGTTTGTCAAGTCGGAGA
ACGACATCTTGGAGTGCCCCATCTGGGTGCTCATCGTTAATGTGGTGGCC
ATGGATATGCTGAAGAGCAAACTGCCACCAGTGCAACGTCCCATTGTGGA
CATCAAGAACCGCCCGCGCATTCCGATTCCCGACGAGGATCCCTACAGCG
TCGCTGGCAACGGAAGTGGCGGTAGCTCCGGCAGCTCTGGCTTCGGCAGT
GGCCACCAGGCGCAACTGCATCCGCAGCAACAGCTGGGCAAGCATCTCAA
TGGCAACGGTGGAGGACATGTGGCCGCCACGCGGGAGCAGCTGCTGCTGC
AGACGCAACAACTGGCCCACAAGCGCAGCGAGAAACCTCCGAAACTACCG
CCCAGGGATAATATCTACTCGCACGATCTGATTCCAAAGCCGGACTACGA
TGATATCGATTTGGAGACCCGTATCAAACTGTCTCGCGGTAAATCTGACA
AGGGCAAAGATAATAAGAAATATGATGATCCCTACTACTGCGGCCTGCGG
GCCCGAGTTCCGAACTTTGTAAAGTCCGGCAAGCCGATACCCGCTCAGGT
TGCCAAGGATCAGCGGGATGGCAATGGGAACAATATCGGGAACGGCGGCA
TCAGCACGCTCAGCCAGAAGAAAACGTCGATGATCCACAACCATTTGGGC
GGCATGCATCCCCATCACATTCAACAGCAGCAACTGATGGCCGCGGCGGC
GGCTGCGCATGCGGCACAGCACCACCATGCGGGTCACCAGCGGGAGCAGC
AGCAGCACCACCAGATTTGGCAGACTCGCAGCTATGAGAGCGGCATAGAT
TCGGAGCTTGTTGAATCACCCTACAATCACATCTACGGACGCCATTTACC
GCTGCCAACGCGCGGCTACGTGCCCACGCCACGCATGTTCATCGGGGAAT
GGGACTGAAAGCTTTCTAGACCAT
BS27543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13188-RB | 1542 | CG13188-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| CG13188-RA | 3078 | CG13188-PA | 1..1432 | 17..1448 | 7160 | 100 | Plus |
| CG13183-RA | 1296 | CG13183-PA | 142..413 | 167..438 | 325 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13188-RB | 2842 | CG13188-RB | 707..2248 | 17..1558 | 7710 | 100 | Plus |
| CG13188-RA | 4532 | CG13188-RA | 707..2138 | 17..1448 | 7160 | 100 | Plus |
| CG13188-RA | 4532 | CG13188-RA | 3827..3938 | 1447..1558 | 560 | 100 | Plus |
| CG13183-RA | 2211 | CG13183-RA | 540..811 | 167..438 | 325 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11964231..11964555 | 1124..1448 | 1625 | 100 | Plus |
| 2R | 25286936 | 2R | 11962670..11962981 | 728..1039 | 1560 | 100 | Plus |
| 2R | 25286936 | 2R | 11962375..11962575 | 531..731 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 11962101..11962270 | 363..532 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 11955583..11955742 | 132..291 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 11950073..11950190 | 17..134 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 11966729..11966841 | 1446..1558 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 11964000..11964086 | 1038..1124 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 11961682..11961756 | 291..365 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 11906133..11906233 | 267..167 | 235 | 82.2 | Minus |
Blast to na_te.dros performed 2014-11-27 06:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6699..6898 | 1213..1414 | 175 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6865 | 1306..1414 | 166 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6852 | 1312..1445 | 160 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2455 | 1304..1445 | 152 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2441 | 1306..1423 | 150 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2380 | 1366..1422 | 123 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2651 | 1209..1414 | 112 | 56.5 | Plus |
BS27543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:23 Download gff for
BS27543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RB | 780..2320 | 17..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:35 Download gff for
BS27543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RB | 707..2247 | 17..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:37 Download gff for
BS27543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RB | 707..2247 | 17..1557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:37 Download gff for
BS27543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11964232..11964555 | 1125..1448 | 100 | -> | Plus |
| 2R | 11966732..11966840 | 1449..1557 | 100 | | Plus |
| 2R | 11962674..11962981 | 732..1039 | 100 | -> | Plus |
| 2R | 11955585..11955742 | 134..291 | 100 | -> | Plus |
| 2R | 11961683..11961755 | 292..364 | 100 | -> | Plus |
| 2R | 11964002..11964086 | 1040..1124 | 100 | -> | Plus |
| 2R | 11962103..11962270 | 365..532 | 100 | -> | Plus |
| 2R | 11962377..11962575 | 533..731 | 100 | -> | Plus |
| 2R | 11950073..11950189 | 17..133 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:35 Download gff for
BS27543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7837578..7837694 | 17..133 | 100 | -> | Plus |
| arm_2R | 7843090..7843247 | 134..291 | 100 | -> | Plus |
| arm_2R | 7849188..7849260 | 292..364 | 100 | -> | Plus |
| arm_2R | 7849608..7849775 | 365..532 | 100 | -> | Plus |
| arm_2R | 7849882..7850080 | 533..731 | 100 | -> | Plus |
| arm_2R | 7851737..7852060 | 1125..1448 | 100 | -> | Plus |
| arm_2R | 7854237..7854345 | 1449..1557 | 100 | | Plus |
| arm_2R | 7850179..7850486 | 732..1039 | 100 | -> | Plus |
| arm_2R | 7851507..7851591 | 1040..1124 | 100 | -> | Plus |
BS27543.pep Sequence
Translation from 16 to 1557
> BS27543.pep
MVSRRKILSRSRDDLNLDQTFTQQEEEEDIWFQKDKLYKEHIQEVLDKWT
QIDDEIWAKVIVFERNRRVAKAYARAPVLTINGSDDGFDGMRIGLCGFDN
PMRDQKTDEMKRVIGQGVKIKMDDAGNILIRRYAKSNVYVKSTASSPNEE
TSIGAEILKLPNQALESEKIVKLFDMKKFQSNVNRELRRAYPDRRRLETQ
CLSAVAFVKSENDILECPIWVLIVNVVAMDMLKSKLPPVQRPIVDIKNRP
RIPIPDEDPYSVAGNGSGGSSGSSGFGSGHQAQLHPQQQLGKHLNGNGGG
HVAATREQLLLQTQQLAHKRSEKPPKLPPRDNIYSHDLIPKPDYDDIDLE
TRIKLSRGKSDKGKDNKKYDDPYYCGLRARVPNFVKSGKPIPAQVAKDQR
DGNGNNIGNGGISTLSQKKTSMIHNHLGGMHPHHIQQQQLMAAAAAAHAA
QHHHAGHQREQQQHHQIWQTRSYESGIDSELVESPYNHIYGRHLPLPTRG
YVPTPRMFIGEWD*
BS27543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13188-PB | 513 | CG13188-PB | 1..513 | 1..513 | 2718 | 100 | Plus |
| CG13188-PA | 1025 | CG13188-PA | 1..477 | 1..477 | 2512 | 100 | Plus |
| CG13183-PA | 431 | CG13183-PA | 1..425 | 1..472 | 913 | 43.5 | Plus |
