BS27545.complete Sequence
1445 bp assembled on 2011-09-12
GenBank Submission: KX802233
> BS27545.complete
GAAGTTATCAGTCGACATGGACGAGTCGCAACCGAAGACCCTATACGTGG
GCAACCTGGATAGCTCAGTGTCCGAGGACCTGCTAATTGCCCTCTTCAGC
ACCATGGGGCCCGTCAAAAGCTGCAAAATCATTCGGGAACCGGGCAACGA
TCCATATGCCTTCATCGAATATTCCAACTACCAGGCAGCCACAACAGCTC
TGACCGCCATGAATAAACGCCTATTCCTCGAAAAGGAAATCAAGGTCAAC
TGGGCCACCAGTCCCGGCAATCAGCCGAAGACAGACATCAGTTCGCACCA
CCACATATTCGTGGGCGACCTCAGTCCCGAGATTGAGACAGAAACACTGC
GCGAGGCTTTCGCCCCATTCGGAGAGATCTCCAACTGTCGCATTGTGCGC
GACCCTCACACCATGAAGTCAAAGGGTTACGCCTTCGTGTCGTTTGTGAA
AAAGGCGGAGGCAGAGAACGCCATCCAGGCGATGAACGGCCAGTGGATTG
GCTCGCGCTCGATACGCACCAACTGGTCCACGCGCAAGCTGCCACCACCA
CGCGAGCCTTCCAAGGGCGGAGGCCAGGGAGGCGGAATGGGTGGCGGACC
GGGCAATGGGTCCGGTGTAAAGGGAAGTCAACGCCACACCTTCGAGGAAG
TGTATAACCAGTCGAGCCCCACCAACACCACCGTATACTGTGGCGGATTC
CCGCCGAATGTCATCAGTGACGACCTGATGCACAAGCACTTCGTCCAGTT
TGGTCCCATCCAGGACGTGCGGGTCTTCAAGGACAAGGGCTTCTCGTTCA
TCAAGTTTGTTACCAAGGAGGCAGCCGCCCACGCCATCGAGCACACGCAC
AACAGCGAGGTACATGGAAACCTGGTAAAGTGCTTCTGGGGCAAAGAGAA
CGGAGGCGATAACTCGGCCAATAACCTCAATGCCGCCGCTGCCGCGGCAG
CAGCCTCTGCCAATGTTGCCGCCGTTGCGGCAGCCAATGCTGCGGTTGCC
GCTGGAGCGGGTATGCCCGGTCAGATGATGACGCAGCAACAGATCGCCGC
CGCAACAGGAGCGGCGATACCCGGCCAAATGATGACACCCCAGCAGATTG
CGGCGCAGTATCCATACGCGTACCAGCAGATGGGCTACTGGTATCCACCT
GCGACTTATCCCACAACCCAGATGCAGACGCAATACATGCAGCAGGGCTA
CTATCCCTACGCCTACCCTACCAGTGCTCAGCAAGCGGGAGGAGTCCCTT
GCATACAATTTTCAGCGGCTGGATACCGCATGGTGCCGCCGAATGTAGCA
TGGGGCGTGCCCGGAACTGTGGTGCCCGGTGTGACGGCTGCCGCAGCATC
CGCGGCCGCTGCAGCGAACGGATCACTTGCCCCCCAAATGATGTACAGTG
CTGCGATGCCACAATACCAGACCCAATGAAAGCTTTCTAGACCAT
BS27545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rox8-RH | 1413 | CG5422-PH | 1..1413 | 17..1429 | 7065 | 100 | Plus |
| Rox8-RG | 1413 | CG5422-PG | 1..1413 | 17..1429 | 7065 | 100 | Plus |
| Rox8-RE | 1413 | CG5422-PE | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rox8-RH | 3370 | CG5422-RH | 1049..2462 | 16..1429 | 7070 | 100 | Plus |
| Rox8-RG | 3328 | CG5422-RG | 1007..2420 | 16..1429 | 7070 | 100 | Plus |
| Rox8-RE | 3222 | CG5422-RE | 901..2314 | 16..1429 | 7070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24044358..24045268 | 1153..243 | 4555 | 100 | Minus |
| 3R | 32079331 | 3R | 24045436..24045666 | 246..16 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 24043964..24044145 | 1429..1248 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 24044197..24044291 | 1247..1153 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:57:22 has no hits.
BS27545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:24 Download gff for
BS27545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RD | 980..2391 | 17..1428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:13 Download gff for
BS27545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 902..2313 | 17..1428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:01 Download gff for
BS27545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 902..2313 | 17..1428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:01 Download gff for
BS27545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24043965..24044145 | 1248..1428 | 100 | <- | Minus |
| 3R | 24044197..24044290 | 1154..1247 | 100 | <- | Minus |
| 3R | 24044358..24045266 | 245..1153 | 100 | <- | Minus |
| 3R | 24045438..24045665 | 17..244 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:13 Download gff for
BS27545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19871160..19871387 | 17..244 | 100 | | Minus |
| arm_3R | 19869687..19869867 | 1248..1428 | 100 | <- | Minus |
| arm_3R | 19869919..19870012 | 1154..1247 | 100 | <- | Minus |
| arm_3R | 19870080..19870988 | 245..1153 | 100 | <- | Minus |
BS27545.pep Sequence
Translation from 16 to 1428
> BS27545.pep
MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFI
EYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVG
DLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAE
NAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSG
VKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQD
VRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNS
ANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAA
IPGQMMTPQQIAAQYPYAYQQMGYWYPPATYPTTQMQTQYMQQGYYPYAY
PTSAQQAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGVTAAAASAAAAA
NGSLAPQMMYSAAMPQYQTQ*
BS27545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rox8-PH | 470 | CG5422-PH | 1..470 | 1..470 | 2487 | 100 | Plus |
| Rox8-PG | 470 | CG5422-PG | 1..470 | 1..470 | 2487 | 100 | Plus |
| Rox8-PE | 470 | CG5422-PE | 1..470 | 1..470 | 2487 | 100 | Plus |
| Rox8-PD | 470 | CG5422-PD | 1..470 | 1..470 | 2487 | 100 | Plus |
| Rox8-PC | 464 | CG5422-PC | 1..464 | 1..470 | 2438 | 98.7 | Plus |
