BS27546.complete Sequence
989 bp assembled on 2011-09-12
GenBank Submission: KX806506
> BS27546.complete
GAAGTTATCAGTCGACATGTTCGCCAACAAATTGTTGACCTGCTCGGCAT
TACTAATAATGTTATTTTTACTAAGCAGTACAGTGTTCTCTCAAAAGCTT
ATTGGCTTGCCGAGAGTCGGTAAAAATGTTAGTGATTTGTTTCTGGAACA
AGCAAACCCACTGACCAGCAGCTCCTCAACAATCTCAACGTCTTCGACAA
CAACTGAGAAACCTATCACAACCAGATCAACTTCTACAATAACTCCGAGA
TCTACCACACCTTCAACGGAATCACCATCGACCACCGCACCAGTGATAAG
CACGACCATTGCCCCGCAACCATATCCGCAACCATCCATTGGGGCTTGGA
ATACCTCTTGTATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTAT
GAGGCTAGGGAGGGAAACTTTACCACCGGTCTGTACAACATCCCCAGCAA
CGCATCTGTTGAAGATGCAGAATGTAAAAGCCAGACTACTCAGTTTATTC
ATCTGATTTGGGGACCAGAAACATCAAAGCAATCATTAATTATGTATTTT
AATAAAAGTAATGACACCACTGTGCTTTCCTTTATGCAAATTCATCTGGC
TTTGCTGCCTGAGGATTTTCCAGATGCAAAGGAAAATCAAACGGTTCAGC
TTATTACCAGGAGCGACGGAGCGTTTAAGACACCAGAAAATATGTCGTAT
CACTGCACTCGTGTTCAGAAGATAAATATGACTGAGACACTCGATGCTGA
GCAGTTAATTGGTTGGATCAGCGTCAGTCATGTTCAGGTGGAGGCTTTCC
GGAGGGCCAACGACACTGGTTTCTCAGTTGGACACGATTGCGATAGCTCG
GAAACTTCGGATGTGGTTCCCATTGCCGTTGGAATTGCTTTAGCTGCATT
AATTTTGGTGGTATTAATATCATATCTGTGTGCTAGGCGTCGTTCCACCT
CCCGCGGTTACATGAGCTTCTAAAAGCTTTCTAGACCAT
BS27546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lamp1-RA | 957 | CG3305-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lamp1-RA | 1583 | CG3305-RA | 107..1063 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21576242..21576583 | 632..973 | 1710 | 100 | Plus |
2L | 23513712 | 2L | 21574785..21575113 | 82..410 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 21575964..21576186 | 410..632 | 1115 | 100 | Plus |
2L | 23513712 | 2L | 21573495..21573561 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:53:25 has no hits.
BS27546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:22 Download gff for
BS27546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3305-RA | 123..1072 | 22..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:57 Download gff for
BS27546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lamp1-RA | 112..1061 | 22..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:20 Download gff for
BS27546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lamp1-RA | 112..1061 | 22..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:20 Download gff for
BS27546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21575965..21576186 | 411..632 | 100 | -> | Plus |
2L | 21576243..21576581 | 633..971 | 100 | | Plus |
2L | 21573500..21573561 | 22..83 | 100 | -> | Plus |
2L | 21574787..21575113 | 84..410 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:57 Download gff for
BS27546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21573500..21573561 | 22..83 | 100 | -> | Plus |
arm_2L | 21574787..21575113 | 84..410 | 100 | -> | Plus |
arm_2L | 21575965..21576186 | 411..632 | 100 | -> | Plus |
arm_2L | 21576243..21576581 | 633..971 | 100 | | Plus |
BS27546.pep Sequence
Translation from 16 to 972
> BS27546.pep
MFANKLLTCSALLIMLFLLSSTVFSQKLIGLPRVGKNVSDLFLEQANPLT
SSSSTISTSSTTTEKPITTRSTSTITPRSTTPSTESPSTTAPVISTTIAP
QPYPQPSIGAWNTSCIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVED
AECKSQTTQFIHLIWGPETSKQSLIMYFNKSNDTTVLSFMQIHLALLPED
FPDAKENQTVQLITRSDGAFKTPENMSYHCTRVQKINMTETLDAEQLIGW
ISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGIALAALILVVL
ISYLCARRRSTSRGYMSF*
BS27546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lamp1-PA | 318 | CG3305-PA | 1..318 | 1..318 | 1616 | 100 | Plus |