Clone BS27546 Report

Search the DGRC for BS27546

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptLamp1-RA
Protein status:BS27546.pep: full length peptide match
Sequenced Size:989

Clone Sequence Records

BS27546.complete Sequence

989 bp assembled on 2011-09-12

GenBank Submission: KX806506

> BS27546.complete
GAAGTTATCAGTCGACATGTTCGCCAACAAATTGTTGACCTGCTCGGCAT
TACTAATAATGTTATTTTTACTAAGCAGTACAGTGTTCTCTCAAAAGCTT
ATTGGCTTGCCGAGAGTCGGTAAAAATGTTAGTGATTTGTTTCTGGAACA
AGCAAACCCACTGACCAGCAGCTCCTCAACAATCTCAACGTCTTCGACAA
CAACTGAGAAACCTATCACAACCAGATCAACTTCTACAATAACTCCGAGA
TCTACCACACCTTCAACGGAATCACCATCGACCACCGCACCAGTGATAAG
CACGACCATTGCCCCGCAACCATATCCGCAACCATCCATTGGGGCTTGGA
ATACCTCTTGTATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTAT
GAGGCTAGGGAGGGAAACTTTACCACCGGTCTGTACAACATCCCCAGCAA
CGCATCTGTTGAAGATGCAGAATGTAAAAGCCAGACTACTCAGTTTATTC
ATCTGATTTGGGGACCAGAAACATCAAAGCAATCATTAATTATGTATTTT
AATAAAAGTAATGACACCACTGTGCTTTCCTTTATGCAAATTCATCTGGC
TTTGCTGCCTGAGGATTTTCCAGATGCAAAGGAAAATCAAACGGTTCAGC
TTATTACCAGGAGCGACGGAGCGTTTAAGACACCAGAAAATATGTCGTAT
CACTGCACTCGTGTTCAGAAGATAAATATGACTGAGACACTCGATGCTGA
GCAGTTAATTGGTTGGATCAGCGTCAGTCATGTTCAGGTGGAGGCTTTCC
GGAGGGCCAACGACACTGGTTTCTCAGTTGGACACGATTGCGATAGCTCG
GAAACTTCGGATGTGGTTCCCATTGCCGTTGGAATTGCTTTAGCTGCATT
AATTTTGGTGGTATTAATATCATATCTGTGTGCTAGGCGTCGTTCCACCT
CCCGCGGTTACATGAGCTTCTAAAAGCTTTCTAGACCAT

BS27546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lamp1-RA 957 CG3305-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lamp1-RA 1583 CG3305-RA 107..1063 17..973 4785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21576242..21576583 632..973 1710 100 Plus
2L 23513712 2L 21574785..21575113 82..410 1645 100 Plus
2L 23513712 2L 21575964..21576186 410..632 1115 100 Plus
2L 23513712 2L 21573495..21573561 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:53:25 has no hits.

BS27546.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:22 Download gff for BS27546.complete
Subject Subject Range Query Range Percent Splice Strand
CG3305-RA 123..1072 22..971 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:57 Download gff for BS27546.complete
Subject Subject Range Query Range Percent Splice Strand
Lamp1-RA 112..1061 22..971 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:20 Download gff for BS27546.complete
Subject Subject Range Query Range Percent Splice Strand
Lamp1-RA 112..1061 22..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:20 Download gff for BS27546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21575965..21576186 411..632 100 -> Plus
2L 21576243..21576581 633..971 100   Plus
2L 21573500..21573561 22..83 100 -> Plus
2L 21574787..21575113 84..410 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:57 Download gff for BS27546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21573500..21573561 22..83 100 -> Plus
arm_2L 21574787..21575113 84..410 100 -> Plus
arm_2L 21575965..21576186 411..632 100 -> Plus
arm_2L 21576243..21576581 633..971 100   Plus

BS27546.pep Sequence

Translation from 16 to 972

> BS27546.pep
MFANKLLTCSALLIMLFLLSSTVFSQKLIGLPRVGKNVSDLFLEQANPLT
SSSSTISTSSTTTEKPITTRSTSTITPRSTTPSTESPSTTAPVISTTIAP
QPYPQPSIGAWNTSCIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVED
AECKSQTTQFIHLIWGPETSKQSLIMYFNKSNDTTVLSFMQIHLALLPED
FPDAKENQTVQLITRSDGAFKTPENMSYHCTRVQKINMTETLDAEQLIGW
ISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGIALAALILVVL
ISYLCARRRSTSRGYMSF*

BS27546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Lamp1-PA 318 CG3305-PA 1..318 1..318 1616 100 Plus