BS27547.complete Sequence
1823 bp assembled on 2011-10-14
GenBank Submission: KX800204
> BS27547.complete
GAAGTTATCAGTCGACATGCATTGCCTGGTGATACTCGGATTTCTGCTGG
GTAGCCTGGTGGCATTCAGCTGGGCAGGAGTCACAACCCAGCCACCGCCA
CTCATACGCACCCTAAGTGCCGGCGGAGACATAGGACCCCAGTTCGACGT
GGGGAAGACCAAGGAACCCGAAGACGCGGAATTCTGGCACAACGTGGGCC
TGAGGCAGCTGGAGAAGACCATTAAGCAGGCGCAGCGCGTGAAGGAGGAC
TCCTACCAGAAAAAGGCGCGGAATATCATCATCTTCATCGGAGACGGCAT
GGGAATATCCACGATCAGTGCTGGTCGCATCTACAAGGGGCAGTACCTGA
AGCATGGTTACGGCGAGGAGGAAACCCTCGTCTTCGACGATTTCCCAAAC
ACTGGAATGGCCAAAACCTACAACGTGGACAAACAAGTGCCGGATTCGGC
GGGCACTGCCACTGCGATCTTCTCGGGTTCGAAAACCCATTACGGAGCCA
TTGGAATGGACGCCACCCGCTCCAAGAAGAATGGGCAGCAAGGCAGGGTC
CAGAGCGTCATGGAGTGGGCCCAGAAGGAGGGCAAGCGCACCGGCGTGGT
CACCACAACCAGGATCACGCACGCCACGCCCGCCGCCACCTACGCCCACA
TCTACGACCGGGACTGGGAGTGCGACACGGAAGTGCCCGCGGAATCGGTG
GGCTTTCATGTCGATATTGCCCGTCAGTTGGTGGAGAATGCTCCGGGAAA
TCGGTTCAATGTGATCCTGGGCGGAGGAATGTCGCCCATGGGCATTCTGA
ATGCCTCCGAGGTGAAGACTACTATTTTCGAAGGACCCACGGAAACAATT
TGCACCCGCGGTGATAACAGAAACCTTCCTGCCGAGTGGCTGGCCCATCA
CGCCAACGACACAGTTCCTCCAGCATTGGTACATAACCGTAAGGATCTGC
TTAATGTGAATGTCAAGAAGGTGGACCATTTGATGGGCCTGTTCCGAAAC
AATCACATTACGTACTCCATAGCCAGGGAGGCGGGAGAGCCTTCCCTGCA
AGAGATGACGGAGACGGCCTTAGGAATCTTGGAAAGGGGCGATGAGTCCA
ACGGCTTTGTGCTCCTGGTGGAAGGAGGTCGCATTGACCAGGGTCACCAC
ATGAACTACGCCCGTGCTGCTCTGCACGAGCTCTACGAATTCGATTTGGC
AATCCAAGCGGCCGTGAACAATACGGATCCCGACGAAACGTTGATCCTGG
TGACGGCAGACCATTCCCACGCGGTCACCTTTAATGGTTACGCGCTCCGT
GGAGCTGATATCCTGGGGACAGCTAATTCACACGAGAAAAACGATCCCAT
GTTCTACGAGACCATCTCGTATGCCAATGGTCCTGGCTATTGGGATCACT
TGGCGAATGACTCCAGACCTCAGAACAGCTCCAACATGTGGATGCCCCTG
AAGCATTTTACCGCTGAGGAGCGGGCTGCTCCCACTTATCGCCACTTGGC
GACGGTTCCCAGAAAGGACGAAACGCACGGCGGCGAGGATGTGGCTGTCT
TTGCATATGGACCTGGTTCCAGTTTGATTCGCGGGGTCTTCGAGCAGAAC
TACTTGGCCTATGTGATGAGCTACGCGGGCTGTTTGGGTCCTGCCAAGGA
CTTCGATGACTCCTGTGAGGATCACAAGGATGGGCAAAAGGATAGGCCGC
TGGACAAACCCAATCCAAAGAGAAATGGCGCCACTGTTGTGGGAGCCTCC
TTGATCCCCATTTTGACTGCTGCCACTGCGGCTATTTTGCGCGGTCGCGG
GCTGTAAAAGCTTTCTAGACCAT
BS27547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aph-4-RA | 1791 | CG1462-PA | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| Aph-4-RB | 1509 | CG1462-PB | 1..1509 | 299..1807 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aph-4-RA | 2153 | CG1462-RA | 235..2025 | 17..1807 | 8955 | 100 | Plus |
| Aph-4-RB | 2021 | CG1462-RB | 258..1893 | 172..1807 | 8180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31050961..31051926 | 416..1381 | 4830 | 100 | Plus |
| 3R | 32079331 | 3R | 31051984..31052412 | 1379..1807 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 31050650..31050893 | 172..415 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31049163..31049319 | 17..173 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:37:28 has no hits.
BS27547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:57 Download gff for
BS27547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 232..2020 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:49 Download gff for
BS27547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 235..2023 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:04 Download gff for
BS27547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 235..2023 | 17..1805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:04 Download gff for
BS27547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31049163..31049319 | 17..173 | 100 | -> | Plus |
| 3R | 31050652..31050893 | 174..415 | 100 | -> | Plus |
| 3R | 31050961..31051924 | 416..1379 | 100 | -> | Plus |
| 3R | 31051985..31052410 | 1380..1805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:49 Download gff for
BS27547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26874885..26875041 | 17..173 | 100 | -> | Plus |
| arm_3R | 26876374..26876615 | 174..415 | 100 | -> | Plus |
| arm_3R | 26876683..26877646 | 416..1379 | 100 | -> | Plus |
| arm_3R | 26877707..26878132 | 1380..1805 | 100 | | Plus |
BS27547.pep Sequence
Translation from 16 to 1806
> BS27547.pep
MHCLVILGFLLGSLVAFSWAGVTTQPPPLIRTLSAGGDIGPQFDVGKTKE
PEDAEFWHNVGLRQLEKTIKQAQRVKEDSYQKKARNIIIFIGDGMGISTI
SAGRIYKGQYLKHGYGEEETLVFDDFPNTGMAKTYNVDKQVPDSAGTATA
IFSGSKTHYGAIGMDATRSKKNGQQGRVQSVMEWAQKEGKRTGVVTTTRI
THATPAATYAHIYDRDWECDTEVPAESVGFHVDIARQLVENAPGNRFNVI
LGGGMSPMGILNASEVKTTIFEGPTETICTRGDNRNLPAEWLAHHANDTV
PPALVHNRKDLLNVNVKKVDHLMGLFRNNHITYSIAREAGEPSLQEMTET
ALGILERGDESNGFVLLVEGGRIDQGHHMNYARAALHELYEFDLAIQAAV
NNTDPDETLILVTADHSHAVTFNGYALRGADILGTANSHEKNDPMFYETI
SYANGPGYWDHLANDSRPQNSSNMWMPLKHFTAEERAAPTYRHLATVPRK
DETHGGEDVAVFAYGPGSSLIRGVFEQNYLAYVMSYAGCLGPAKDFDDSC
EDHKDGQKDRPLDKPNPKRNGATVVGASLIPILTAATAAILRGRGL*
BS27547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aph-4-PA | 596 | CG1462-PA | 1..596 | 1..596 | 3157 | 100 | Plus |
| Aph-4-PB | 502 | CG1462-PB | 1..502 | 95..596 | 2664 | 100 | Plus |
| CG8147-PA | 546 | CG8147-PA | 56..530 | 43..540 | 867 | 39.3 | Plus |
| CG16771-PE | 596 | CG16771-PE | 68..583 | 15..545 | 856 | 38.9 | Plus |
| CG16771-PD | 596 | CG16771-PD | 68..583 | 15..545 | 856 | 38.9 | Plus |
