BS27548.complete Sequence
2150 bp assembled on 2011-11-15
GenBank Submission: KX801170
> BS27548.complete
GAAGTTATCAGTCGACATGTTGAGGAATTTGTTAAAGTCACGTTTCCCGG
CACCGCGCAGCATGTCCTGCTTCTCGCACGTGATGAACCCGATAACGGGG
CAGAACTCCTGGCAGGAGCGCGGCGATGACTACGACTACCACCTGGAGGT
GGCCAACGCCGGATTCGGCGACATGCTGCACGACTGGGAGCGCAACCAGA
AGTACTTCGCCGCTCTGAGAAAGACCATAGCCGGAATGCGTGAGGCGGGC
AGGGAGGTGCACGTGCTGGACATCGGCACGGGCACGGGAATCCTGTCGAT
GATGGCCTTGGCAGCAGGAGCGGATTCGGTGACCGCTTGCGAGGCCTTCC
TGCCAATGGCCAATTGCGCGGAGAAAATTCTGGCGGCCAACGGAGCTGGC
GACAAGGTGCGTCTCATCCGAAAGCGATCCACAGAGATCCAAGTGGGCGA
GGATATGCCGCGAAAGGCGAATCTGCTAGTGGCCGAGCTGCTGGATACAG
AACTGATTGGCGAGGGTGCCATCGGCATCTACAACCATGCCCACGCCGAA
CTGCTGACCGAGGACGCTCTCTGCATTCCCGCGCGCGCCAGATGCTATGC
CCAGGTGGCGCAATCTCCGCTAGCTGCGCAGTGGAACAGCCTGAAAACGA
TTGCCAACTTGGACGGCGAACCTTTGCTGCACCCACCGGAGCAGCTGAAG
AGCTGCCAAGGAGAAGCTGCGCTGCACGACGTCCAGCTGTCGCAGCTGCC
AAGCTCCGCATTCCGCCCGCTCACCGATCCCGTCGAGATCTTCCAGTTCG
ATTTCCAGCGCAAGCAGGAGCGGGAGAAGCAGCGGTCGCAATTACTAAAG
CTGCAGTCCAAGCAACCGGGAGCCGCTGAGCTGGTCTTCTACTGGTGGGA
CATTCAGCTGGACGATGACGGGGAGATATTGCTCAGCTGTGCTCCTTACT
GGGCGCATCCACAGCTGAAGGAGCTGGCAGCTGAGAAGGCGAAGGATCAT
CCGCTGCCCAATGTGGTGCCCTGGCGGGATCACTGGATGCAGGCCATCTA
CTACATACCCAAGCCCCTGCAACTGCTCGAGGCAGGTAAATCCTTCCACC
TCAGCTGCCACCACGATGAGTACTCCCTCTGGTTCGATGCACGCGAAGAG
GCGCCCACGAAGAGCGTGCGGCGGCATACCTGCACCTGCGACCTGCACAT
GACCTACTCACGCAGTAGGATTGGCCAGCTCAACCAGTCACCGCGAAACA
AGCGCTACCTGCGCTACCTGGAGGAAAGCATAGAGGCGGAGAAGTCGAAT
GTCCTGGTCCTCGGAAACGGCTGCCTGCTGGGACTTGCTAGCTCTGCTTT
GGGTGCTGCGTCTGTGCTGCTCCACGAACCCCATCGCTTCTCGCGTAGAT
TAATCGAGTCGATTGTTAAGCACAACCAGCTTAAGAATGTCCAGTTTTTG
GACAAGGTGGAGGAACTGGAGGACTCTCGGCTAGCTGCGCTCACTCACAT
TTTCGCTGAGCCCTACTTCCTCAATGCGATTCTACCCTGGGACAACTTCT
ACTTTGGCACCCTGCTCACCAAAATCAAGGACAGGCTGCCGGAAGGTGTA
AAGATTTCGCCATGCTCGGCGCGCATCTATGCTCTTCCCGTGGAGTTTCT
CGATCTGCACAAGATTCGAGCGCCCGTTGGCAGCTGCGAGGGATTTGATC
TGCGCCTGTTTGATGAAATGGTGGAGCGCTCAGCAGAGCAGGCAGTGTCC
TTGGTGGAGGCGCAGCCCCTGTGGGAATATCCCTGTCGCGCACTCTCAGA
ACCCCAGGAAGTTCTCAGTGTGGATTTTAGTAACTTTGGCCAAGAGCACA
GCCTGAAGGGCAGCATTGAGCTCAAGCACCCCAGAATCTGCAACGGAGTG
GCCTTATGGGTGGACTGGCAGTTGGTGGAGGACAATAGCCCCAGATCCAT
TGTAAGCAGTGGTCCCAGTGAACCTGTCGTGCCCGGCGAGTTCGTAAAGT
GGGACATGTTTGTGAGACAGGGAGTGCACTTTCCAAGGAGACCCAAAGAA
GCCATTACGCATCTAGAATGGAGCACGGTTTTCAAGCCCCTGCTGGGTGA
ACTGACCTTCAGCTTTGGCCAGAAGAAGCTTTAAAAGCTTTCTAGACCAT
BS27548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art7-RB | 2073 | CG9882-PB | 1..2073 | 62..2134 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art7-RB | 2230 | CG9882-RB | 21..2138 | 17..2134 | 10590 | 100 | Plus |
| CG3085-RB | 1749 | CG3085-RB | 1672..1749 | 2134..2057 | 390 | 100 | Minus |
| CG3085-RA | 1670 | CG3085-RA | 1593..1670 | 2134..2057 | 390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23077309..23079018 | 1726..17 | 8550 | 100 | Minus |
| 2R | 25286936 | 2R | 23076780..23077035 | 2134..1879 | 1280 | 100 | Minus |
| 2R | 25286936 | 2R | 23077091..23077244 | 1878..1725 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:49:24 has no hits.
BS27548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 13:53:10 Download gff for
BS27548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art7-RB | 24..2134 | 22..2132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:32 Download gff for
BS27548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art7-RB | 26..2136 | 22..2132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:39 Download gff for
BS27548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art7-RB | 26..2136 | 22..2132 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:39 Download gff for
BS27548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23076782..23077035 | 1879..2132 | 100 | <- | Minus |
| 2R | 23077091..23077242 | 1727..1878 | 100 | <- | Minus |
| 2R | 23077309..23079013 | 22..1726 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:32 Download gff for
BS27548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18964305..18964558 | 1879..2132 | 100 | <- | Minus |
| arm_2R | 18964614..18964765 | 1727..1878 | 100 | <- | Minus |
| arm_2R | 18964832..18966536 | 22..1726 | 100 | | Minus |
BS27548.pep Sequence
Translation from 16 to 2133
> BS27548.pep
MLRNLLKSRFPAPRSMSCFSHVMNPITGQNSWQERGDDYDYHLEVANAGF
GDMLHDWERNQKYFAALRKTIAGMREAGREVHVLDIGTGTGILSMMALAA
GADSVTACEAFLPMANCAEKILAANGAGDKVRLIRKRSTEIQVGEDMPRK
ANLLVAELLDTELIGEGAIGIYNHAHAELLTEDALCIPARARCYAQVAQS
PLAAQWNSLKTIANLDGEPLLHPPEQLKSCQGEAALHDVQLSQLPSSAFR
PLTDPVEIFQFDFQRKQEREKQRSQLLKLQSKQPGAAELVFYWWDIQLDD
DGEILLSCAPYWAHPQLKELAAEKAKDHPLPNVVPWRDHWMQAIYYIPKP
LQLLEAGKSFHLSCHHDEYSLWFDAREEAPTKSVRRHTCTCDLHMTYSRS
RIGQLNQSPRNKRYLRYLEESIEAEKSNVLVLGNGCLLGLASSALGAASV
LLHEPHRFSRRLIESIVKHNQLKNVQFLDKVEELEDSRLAALTHIFAEPY
FLNAILPWDNFYFGTLLTKIKDRLPEGVKISPCSARIYALPVEFLDLHKI
RAPVGSCEGFDLRLFDEMVERSAEQAVSLVEAQPLWEYPCRALSEPQEVL
SVDFSNFGQEHSLKGSIELKHPRICNGVALWVDWQLVEDNSPRSIVSSGP
SEPVVPGEFVKWDMFVRQGVHFPRRPKEAITHLEWSTVFKPLLGELTFSF
GQKKL*
BS27548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art7-PB | 690 | CG9882-PB | 1..690 | 16..705 | 3648 | 100 | Plus |
