BS27549.complete Sequence
2141 bp assembled on 2011-10-14
GenBank Submission: KX803907
> BS27549.complete
GAAGTTATCAGTCGACATGCCCATAGGAAGCATTATCAAAAAGGCTTCTA
GTTTCATACTGGGCGACGAGAGATTGGACAGAAAAATCGATATTGCTTAC
GAAGACAACGAAATCCTCTTCTGCAAGAATAACGTCTGCATCCATCCGCC
CACAATCGCCCGCGATGAGTCGGATATACTGCACAATCCGGGCTATTTGA
CCTGCACGACAAAGACCTTTGTAGATCAGTATAATAGCGCCAAGAGGCCC
ACGCTTCTGCTCACCTGGATACCGAACTCGTCGCTATGCAAGTATACCAA
TCTGAATGCCGACGATTGCCGGGGTCAGTGTAATCCGAGGAGCAAGTCGC
CGGACTCTCGAAACGGCTACTGCCACGTGACCATACCGCAGACGATCCAG
GAGAGGGACATTCGGGAGGAGGATGAGAACGCGGCGGATATGCAGGAGCT
AAAGAACGAACTGCAACCGCTGCTGGGTGGCCAAGCTGCATCCATAGACG
ACTTGACCGCTCTGCTGAAGAATAACCCCATCACGTCGGTGAACATAACG
ATCTCCAATCCGCAGATCGAGAACAGCAATATATCGCAGTCCTTCAACTG
CATCACCATCCGGCCGGATAGTAACAATTGCTCCGATTGCACGAATGGTT
CTGGAGTAGGCGATGGCCCGGCAACCGATAACCCAAAGTGGACAACACCT
GAACTGCTGGCCTTCAAGCACAACCTGGAGTTCCCGGATAGCGGCAATTC
GACGCCAGCCGATCGCCAAAAATCCGCGATGAAGTGCCGCCATTTCTCCG
TTGACCTAAGCCAAATGCGATCTCTGCGCCTTTTCTTCAATGACGACAAC
TGCACTTCGGGTCAGCTGGTGATCGCGTCGCGGGAGTCGCAGTACAAGAT
TCTACATTTCCATTACGGTGGCTTGGATCACCTGGCCCAGGTGCTGCACC
AGTGGCACTGCTTTCTGCACAACATCACATCGGAAACGGGCCAGGATAAA
TTCGATTTGCCGTACAGGCACTTCATGGTCTGTCGGCCGGAGGTTAAGAA
ATCGGAAATGCATCCGGACGAGGGCGATGTCAAGAAGATAACAACGAACT
TTTTCTACGGCACGCTGCTCAATGAGAAGGGACAGATCGAGGACGACTTG
CTGCTCCGGAAATGTGTCTTCTTTGGTGGCTTGGAAAAGAGTCTGCGAAA
GACGGTGTGGCCATTCCTTCTAAAGTGCTACTCATTCTCCTCGACATTCG
AGGATCGCGCAGTGCTCATGGACATCAAGCGGCAGGAGTACGAGGAAATT
ACGCGAAAGCGCCTGTACTCGATGTCCCCAGAACAGCAAATTCACTTCTG
GAAGACCGTGCAGATTGTGGTGGAGAAGGATGTGGTTCGCACGGATCGCA
CCAATCCGTTCTTCTGCGGCGACGATAATCCCAATACCGAGGTCATGAAA
AACATTTTGCTTAACTTTGCCGTATACAACACCGGAATGTCCTATTCCCA
GGGTATGAGTGATCTCCTTGCGCCTGTCCTGTGCGAAGTTCAAAACGAGT
CCGAGACCTTCTGGTGCTTCGTTGGCCTGATGCAGCGGGCCTTCTTCGTC
TGCACTCCCACCGACCGGGATGTGGACCACAATCTGAGCTACCTGCGCGA
ACTGATCCGGATAATGCTGCCGCACTTCTACAAGCATCTGGAACAGCACA
ACGACTCCATGGAGCTGCTCTTTTGCCATCGTTGGCTGCTATTGTGCTTT
AAGCGCGAATTCACCGAAGCGGTGGTCATACGGATGTGGGAGGCGTGCTG
GTCAAACTACTTGACAGACTACTTTCATCTGTTCCTCTGCCTGGCCATCA
TCGCTGTCTATGCGGACGATGTGGTGGCACAGAATCTACGCCCGGACGAG
ATGCTGCTGCACTTCAGTTCGCTGGCCATGTACATGGACGGCCAACTGAT
CTTGCGAAAGGCGCGCGGCCTGCTCCACCAGTACCGCCAGTTGCCGAAGA
TTCCGTGCACCCTGAGTGGCCTGTGCAAGCGTTGCGGTCCGGGAATGTGG
GACTCCGAGCATCGACCGGCGCTGGAGTGCGTGGGCCACAGTGATGACGA
AAAGTGCTCGCTTTCTATTGACTAGAAGCTTTCTAGACCAT
BS27549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5337-RA | 2109 | CG5337-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5337-RA | 2896 | CG5337-RA | 319..2428 | 16..2125 | 10550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10433852..10435338 | 1502..16 | 7435 | 100 | Minus |
| 2L | 23513712 | 2L | 10433155..10433781 | 2125..1499 | 3135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:38:34 has no hits.
BS27549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:59 Download gff for
BS27549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5337-RA | 343..2451 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:19 Download gff for
BS27549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5337-RA | 320..2428 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:31 Download gff for
BS27549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5337-RA | 320..2428 | 17..2125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:31 Download gff for
BS27549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10433155..10433778 | 1502..2125 | 100 | <- | Minus |
| 2L | 10433853..10435337 | 17..1501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:19 Download gff for
BS27549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10433155..10433778 | 1502..2125 | 100 | <- | Minus |
| arm_2L | 10433853..10435337 | 17..1501 | 100 | | Minus |
BS27549.pep Sequence
Translation from 16 to 2124
> BS27549.pep
MPIGSIIKKASSFILGDERLDRKIDIAYEDNEILFCKNNVCIHPPTIARD
ESDILHNPGYLTCTTKTFVDQYNSAKRPTLLLTWIPNSSLCKYTNLNADD
CRGQCNPRSKSPDSRNGYCHVTIPQTIQERDIREEDENAADMQELKNELQ
PLLGGQAASIDDLTALLKNNPITSVNITISNPQIENSNISQSFNCITIRP
DSNNCSDCTNGSGVGDGPATDNPKWTTPELLAFKHNLEFPDSGNSTPADR
QKSAMKCRHFSVDLSQMRSLRLFFNDDNCTSGQLVIASRESQYKILHFHY
GGLDHLAQVLHQWHCFLHNITSETGQDKFDLPYRHFMVCRPEVKKSEMHP
DEGDVKKITTNFFYGTLLNEKGQIEDDLLLRKCVFFGGLEKSLRKTVWPF
LLKCYSFSSTFEDRAVLMDIKRQEYEEITRKRLYSMSPEQQIHFWKTVQI
VVEKDVVRTDRTNPFFCGDDNPNTEVMKNILLNFAVYNTGMSYSQGMSDL
LAPVLCEVQNESETFWCFVGLMQRAFFVCTPTDRDVDHNLSYLRELIRIM
LPHFYKHLEQHNDSMELLFCHRWLLLCFKREFTEAVVIRMWEACWSNYLT
DYFHLFLCLAIIAVYADDVVAQNLRPDEMLLHFSSLAMYMDGQLILRKAR
GLLHQYRQLPKIPCTLSGLCKRCGPGMWDSEHRPALECVGHSDDEKCSLS
ID*
BS27549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5337-PA | 702 | CG5337-PA | 1..702 | 1..702 | 3799 | 100 | Plus |
| Tbc1d15-17-PC | 715 | CG11490-PC | 356..647 | 372..663 | 454 | 34.8 | Plus |
| Tbc1d15-17-PB | 715 | CG11490-PB | 356..647 | 372..663 | 454 | 34.8 | Plus |
| Tbc1d15-17-PA | 715 | CG11490-PA | 356..647 | 372..663 | 454 | 34.8 | Plus |
| CG8155-PA | 1098 | CG8155-PA | 154..440 | 316..597 | 315 | 28.9 | Plus |
