BS27552.complete Sequence
1058 bp assembled on 2011-09-12
GenBank Submission: KX800885
> BS27552.complete
GAAGTTATCAGTCGACATGGGCAACGCCAGCTCCTCCGTGCACATGCAAC
GCGAGCGCCACAAGTCGACCGACTTGTCCACGCCGAGCTCTCCCGCACAT
TTCCGCGATTCGATTGGTGGAGGAGGAGCGGGACAGGGCGGGAGTGCTGG
CGCAGCAGCTCTGGGCGCTGCAGCGGGGGCGGTGGGAGCTGCGGGGGGTG
GAGGAGGAGGCGGCGGAGGCCAAGCTTTCTCGTTCGACAAAAAACATACG
GCAGTCTTGAACGAGGGCTCGTCGCAAGAAGACGACGACCCGTACTACAC
GGGAACTGGAACTGGATCCACTAGACGAGGCACCGCACACGACGACGCTA
CATCAGCTGTTACCCGAGACCACTCCAGCATGGACAACAACGAGGAGGAG
GAGGAGGCAGCGGTAGGAGCGGAGCCAGCGACTGGATCTCAGTTAACCGG
CGATGAGGACGACATCCGGAAGACGGCACTGCCCACAGTTCTGCGGTGGG
ACGGCGGCGGCAAGAACGTCACCATCTCGGGCACATTCTCCGATTGGAAG
CCCATGGCCATGGTGCGCAGCCATCAGAACTTCGTGACCATCATAGATCT
GCCGGAGGGCGACCATCAGTACAAGTTCTGCGTGGACGGCGAGTGGAAGC
ACGATCCCAAGCTGAAAAGCGTGGAGAACGCCGAGGGACAGAGAAATAAC
TTAGTGTCCGTGCGAGAATCCGATTTCGAGGTGTTCCAGGCCCTAGCCAA
AGACAGCGAGAACGTGACCAACTATGCGGAGAAGGAGTACTCGCAGGAGG
TGCCGCAGGTGAAGCCCTGGGAGAAGGTATCTGGCCCGCCCGTTCTGCCG
CCCCATCTGCTCCAGGTCATCCTCAACAAGGATACACCGCTATCGTGTGA
ACCCACTCTGCTGCCGGAACCCAACCACGTGATGCTTAACCACTTGTACG
CCCTGTCTATCAAGGATGGCGTCATGGTCCTGAGTGCCACGCACAGGTAT
CGCAAGAAGTACGTCACCACGCTGCTGTACAAGCCCATTTAGAAGCTTTC
TAGACCAT
BS27552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-RA | 1026 | CG8057-PA | 1..1026 | 17..1042 | 5115 | 99.9 | Plus |
| alc-RB | 663 | CG8057-PB | 1..663 | 380..1042 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-RA | 1544 | CG8057-RA | 334..1360 | 16..1042 | 5120 | 99.9 | Plus |
| alc-RB | 981 | CG8057-RB | 1..797 | 246..1042 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9136952..9137600 | 664..16 | 3230 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9135765..9135996 | 895..664 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 9135559..9135706 | 1042..895 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:58:56 has no hits.
BS27552.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:25 Download gff for
BS27552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 352..1377 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:16 Download gff for
BS27552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 335..1360 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:46 Download gff for
BS27552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 335..1360 | 17..1042 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:46 Download gff for
BS27552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9135559..9135705 | 896..1042 | 100 | <- | Minus |
| 2R | 9135765..9135995 | 665..895 | 100 | <- | Minus |
| 2R | 9136952..9137599 | 17..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:16 Download gff for
BS27552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5023064..5023210 | 896..1042 | 100 | <- | Minus |
| arm_2R | 5023270..5023500 | 665..895 | 100 | <- | Minus |
| arm_2R | 5024457..5025104 | 17..664 | 99 | | Minus |
BS27552.pep Sequence
Translation from 16 to 1041
> BS27552.pep
MGNASSSVHMQRERHKSTDLSTPSSPAHFRDSIGGGGAGQGGSAGAAALG
AAAGAVGAAGGGGGGGGGQAFSFDKKHTAVLNEGSSQEDDDPYYTGTGTG
STRRGTAHDDATSAVTRDHSSMDNNEEEEEAAVGAEPATGSQLTGDEDDI
RKTALPTVLRWDGGGKNVTISGTFSDWKPMAMVRSHQNFVTIIDLPEGDH
QYKFCVDGEWKHDPKLKSVENAEGQRNNLVSVRESDFEVFQALAKDSENV
TNYAEKEYSQEVPQVKPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLP
EPNHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI*
BS27552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-PA | 341 | CG8057-PA | 1..341 | 1..341 | 1801 | 100 | Plus |
| alc-PB | 220 | CG8057-PB | 1..220 | 122..341 | 1170 | 100 | Plus |
