BS27553.complete Sequence
1616 bp assembled on 2011-10-14
GenBank Submission: KX803753
> BS27553.complete
GAAGTTATCAGTCGACATGGACGAAGAGGAGGAGGAGGAGGTTACGGATC
TAAAGCTGCAATTGTTCCACAATACAGTACGCGAGCACATTATATTCTTG
CTACTGATAATCTTGCTGTACTCCAGCTCCTATGTGGTCGTCTCACGTTT
TAGGCGGCGCGACCGTGACGATCTCTATTCGAATGACGAGGACGAGGTGC
TGGTCTATCGCATAAGCTTTTGGCTGTGCACATTCACACTGGCCGTTGCC
GAAGGGGCTGCCATGCTGCTGCCCGTTTCCATTGCCAGCAATGAGGTGCT
ACTCCTCTATCCCAACAGTTACTATGTGAAATGGCTAAACAGTTCACTCA
TACAGGGCTTGTGGAACCATGTATTTCTGTTCTCCAATCTGTCACTGTTC
ATCTTCCTGCCATTTGTCTATTTGTTCTCGGAATCCACGGGATTCGTCGG
CAACAAGAAGGGCATCCTGCCGCGAGTCTACGAAACCTTTACAGTATTTA
TGCTGATGGCCATTATTGTCCTCGTACTAACTGCCGTCCTAAGTGCAGTC
TTTGGCATTGAAAAGCTTCAATTCTTCTGGTTTCTAAATTTGGGCAGTGT
TCACCTGCCGTTTCTTTATTCGTGTGTCTCGTTTTTGGGTGTCATGCTTA
TGCTGATTTGCACCCCGTATGGCTTTGTGCGCCTCTTTGGCGTTGTTAAC
CAGGTGCTGGTGCGACCTATGCTACTGCGCGACGTCAACGAGGAGTTTAG
CGCCTTCTACATGGAGGAGGCGAGCGTGAAGCGGAAGCTAGCGCACATTG
AGCTGCACAACGTGAGCATTGCGGATGCCGCCAACGGAGGTCGCCTTGGC
AATCGGATTGGTCTGGGACGTGGGCGCACCTTCTATCCCCAGCCACTGCT
GCAACACTCCCAGGCTCATCTATACCAGCGCAAGGCGATGGCCAGTGACG
TGGACGAGCTCAACGATAGACTAAGAGAACTGGACTCCGAGCGCAAGGAA
CTAGACAAGCTGCGCACATCGAGCACCTTCCAACGCACATTCGTCTATCC
GCTGGCCATGCTGCTGCTGCTCTTCTGCACAGCTGTCACCATTCTGCTGG
TTGTGCAGAATACACTAGAGCTCCTTATTGGCATTAAGGCGCTGCCACTA
AGCACAAGGCAATTCGCATTGGGCATCTCTTCGCTCTCGAAGTTGGGTCC
CTTTGGTGCCGGCCTGGAGGTGTGTCTCATCTTCTATCTCGGCGCCACCT
CGGTGGTGGGCTTCTACAGCATGCCGTTCATGCGCAAGGTTTGTCCCAAG
CGGCGCCAGACTTCGCTGCCACAGCTAATGCTGAACTGTGGCTTCATGCT
GGTTTTGTCGTCGGCATTGCCGCTTCTCAGCAGGATCATAGGCATCACAA
ACTTTGACCTGCTGGGTGATTTTGGAGCCATCGAGTGGTTGGGAAACTTC
CAGATTGTATTGCTTTACAATTTGGTTTTTGGAACCACAACTGCCCTGTG
CTTGGCAAACAAATTCACGGCTACGGTGCGCCGGGAGCTAAGAGCCCGGT
TAGTGGAGAACTATGTGCTCTTTACTAACTACATTAGCTTCATCAACTGA
AAGCTTTCTAGACCAT
BS27553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5807-RA | 1584 | CG5807-PA | 1..1584 | 17..1600 | 7920 | 100 | Plus |
| CG5807-RB | 1560 | CG5807-PB | 1..1532 | 17..1548 | 7660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5807-RA | 2690 | CG5807-RA | 362..1946 | 16..1600 | 7925 | 100 | Plus |
| CG5807-RB | 2035 | CG5807-RB | 362..1894 | 16..1548 | 7665 | 100 | Plus |
| CG6980-RA | 927 | CG6980-RA | 847..915 | 656..588 | 345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24806978..24807480 | 1159..657 | 2515 | 100 | Minus |
| 3R | 32079331 | 3R | 24806685..24806918 | 1392..1159 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 24808815..24809046 | 587..356 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 24806411..24806621 | 1600..1390 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 24809105..24809247 | 357..215 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24809362..24809486 | 216..92 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 24813576..24813651 | 91..16 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 24808597..24808665 | 656..588 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:58:46 has no hits.
BS27553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:49 Download gff for
BS27553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 379..1961 | 17..1599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:41 Download gff for
BS27553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 363..1945 | 17..1599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:12 Download gff for
BS27553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 363..1945 | 17..1599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:12 Download gff for
BS27553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24808815..24809045 | 357..587 | 100 | <- | Minus |
| 3R | 24809106..24809245 | 217..356 | 100 | <- | Minus |
| 3R | 24809362..24809486 | 92..216 | 100 | <- | Minus |
| 3R | 24813576..24813650 | 17..91 | 100 | | Minus |
| 3R | 24806412..24806619 | 1392..1599 | 100 | <- | Minus |
| 3R | 24806686..24806917 | 1160..1391 | 100 | <- | Minus |
| 3R | 24806978..24807480 | 657..1159 | 100 | <- | Minus |
| 3R | 24808597..24808665 | 588..656 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:41 Download gff for
BS27553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20634537..20634767 | 357..587 | 100 | <- | Minus |
| arm_3R | 20634828..20634967 | 217..356 | 100 | <- | Minus |
| arm_3R | 20635084..20635208 | 92..216 | 100 | <- | Minus |
| arm_3R | 20632134..20632341 | 1392..1599 | 100 | <- | Minus |
| arm_3R | 20632408..20632639 | 1160..1391 | 100 | <- | Minus |
| arm_3R | 20632700..20633202 | 657..1159 | 100 | <- | Minus |
| arm_3R | 20634319..20634387 | 588..656 | 100 | <- | Minus |
| arm_3R | 20639298..20639372 | 17..91 | 100 | | Minus |
BS27553.pep Sequence
Translation from 16 to 1599
> BS27553.pep
MDEEEEEEVTDLKLQLFHNTVREHIIFLLLIILLYSSSYVVVSRFRRRDR
DDLYSNDEDEVLVYRISFWLCTFTLAVAEGAAMLLPVSIASNEVLLLYPN
SYYVKWLNSSLIQGLWNHVFLFSNLSLFIFLPFVYLFSESTGFVGNKKGI
LPRVYETFTVFMLMAIIVLVLTAVLSAVFGIEKLQFFWFLNLGSVHLPFL
YSCVSFLGVMLMLICTPYGFVRLFGVVNQVLVRPMLLRDVNEEFSAFYME
EASVKRKLAHIELHNVSIADAANGGRLGNRIGLGRGRTFYPQPLLQHSQA
HLYQRKAMASDVDELNDRLRELDSERKELDKLRTSSTFQRTFVYPLAMLL
LLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGISSLSKLGPFGAGL
EVCLIFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSA
LPLLSRIIGITNFDLLGDFGAIEWLGNFQIVLLYNLVFGTTTALCLANKF
TATVRRELRARLVENYVLFTNYISFIN*
BS27553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5807-PA | 527 | CG5807-PA | 1..527 | 1..527 | 2671 | 100 | Plus |
| CG5807-PB | 519 | CG5807-PB | 1..518 | 1..518 | 2598 | 99 | Plus |
