BS27554.complete Sequence
1730 bp assembled on 2011-10-14
GenBank Submission: KX806421
> BS27554.complete
GAAGTTATCAGTCGACATGTCGCAGCATAACTATACGAACCCGGCCTTCT
GCCAGAACAGCGAGTATTACCCGGTGCCCAGCGGCAACTCGTCGCGAGTG
GAGTCCATCTACAACAGAAGCCTCCAGATGAACTTTGGAGCGGCTCCTCC
GCGCGCCACTCGAGATCCCCGCGAGGGTCCACTGCGAATGCAGCGTAGCA
TGTCCACGCGATCGGTGACGCGGAAACAACACCAGCAGCAGCAGCAGCAG
CAACACCAACAGCAGATACACCAGCAACACCTGGCTCAGCAGCAGCAACA
CCAGCCGCAATCCTCTAGTGGTCGCTATGCCTTGGTTCCCCTAGAGGAGC
TGAACAGCAGTAGGGCCAGTAGATACGCCATAGTTCCAGGACAGGCGGCA
CAGAGACTGGCCCGATCACAGGATAATCTGGATCGCTATGGCTCCAGACA
TGGATTGCACGAAGAGGAGGAGCCTCACTCCTTCCACGAGGAACCCCATC
AGGAGACCCAGTTTGCCAGCTTGCCACCGATACTTAATTTGCCGCCCAAG
CCCAGGAATATTAACAACAATACCAATGCCAATCAAACCCAGATTAAGCA
TGCTTTTAGTAGCGACTTCGGCAGCAAGACCTTCTTGATAGTGGATAAGA
ATAGCAACCAGAGGTACCAGATGGTGCCCACCGCCGAGGACGAGGAGCTG
GTAGACGAGAACCAGGAGATCATACAGATGCACAATGGCCGCGCCCATCG
ATATGCAGTGGTGCCCACGGATGCGGACGACGATGATCTGGCGGAGGAGC
AGGAGCAGCAGGAAACCTGCCTGAGCAACATGGAATTGAGCAGGCAGTAC
GCAGCGAGGACCTCAACGCCGCAGCAAAAGAATGCGGCTGCCGCTACGAG
GGCCCTGCACGAGCTCCTGACCACGCCCAGGAAGATGCAGCCGCCTCCGC
GATTGGCGCACTCAACGCCCCGGAACGCCGCCCACCACGAGCAGCTGCAG
CTGGAAAGGCGCTTGGAGATCTACAAAAGCCAACAGATCTACCAAAGCCA
ACAAGTTGGAGCGGTAGTAGGAGTCCCTCCAACCTTGCCACTTCGCCAGA
ATCGACTCTCCCCCCAGAGACTTCACTACGAGACCGTGAAGCCGCTTCCC
ATGCAGATCGCCGATCGATCCATGGCCGTCATCAGTCCCAGGGTCCAGGA
GCAGGGGCAGGAGCAGGAACGGGAACAGGACATGAGCAGCATCCAGGGAA
AGGGCAAGAAAAACAGCTCCTATCCGCAGAAGATGGCCAATGCCACCATT
ACCTTGGCCGTTGTCTCCCTGATGCTCGTCTTGGGCAGCACCATGAATGC
GGGGCTCATCATCTACATGATAGCACACCTCGGAAAGTCCTTTTACCTGC
AGTTTAGCCTGGTGGCCTCCTTCTCCGGAATGGGACTCGGCTTCCTGGGA
TTCAAGTCGCGCCACTGCGAGTGGCTGCCGAACAGGAGCTATAGTTCCGG
CTATATCCTGGTCACCGTATTTTGCCTATTCAAGTCCTGCGGATTGCTTG
TGATACTCGTGGTGGACCCCTTCCCCGGATTTCCTGTCCACGATGTGACC
ACTGGCGTCATCCTTGGACTGTCGACTTTCACCATGTTCTTCATCGGATT
GGGAGTGCTGGGCAGCTTGTGGTGCCACCGACCTCCGCCAGACAACCGCG
TCAACGTGGTCTAAAAGCTTTCTAGACCAT
BS27554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spdo-RA | 1698 | CG31020-PA | 1..1698 | 17..1714 | 8475 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spdo-RA | 2087 | CG31020-RA | 128..1827 | 15..1714 | 8485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30476811..30478174 | 15..1378 | 6805 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30478250..30478589 | 1375..1714 | 1685 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-26 16:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..740 | 1267..1169 | 127 | 66.3 | Minus |
BS27554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:50 Download gff for
BS27554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spdo-RA | 125..1820 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:51 Download gff for
BS27554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spdo-RA | 130..1825 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:23 Download gff for
BS27554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spdo-RA | 130..1825 | 17..1712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:23 Download gff for
BS27554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30476813..30478174 | 17..1378 | 99 | -> | Plus |
| 3R | 30478254..30478587 | 1379..1712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:51 Download gff for
BS27554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26302535..26303896 | 17..1378 | 99 | -> | Plus |
| arm_3R | 26303976..26304309 | 1379..1712 | 100 | | Plus |
BS27554.pep Sequence
Translation from 16 to 1713
> BS27554.pep
MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRD
PREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSS
SGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEE
EEPHSFHEEPHQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSD
FGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHNGRAHRYAVVP
TDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHEL
LTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIYKSQQIYQSQQVGAV
VGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ
EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIY
MIAHLGKSFYLQFSLVASFSGMGLGFLGFKSRHCEWLPNRSYSSGYILVT
VFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGS
LWCHRPPPDNRVNVV*
BS27554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spdo-PA | 565 | CG31020-PA | 1..565 | 1..565 | 2947 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 846..1187 | 48..412 | 165 | 21.7 | Plus |
