BS27556.complete Sequence
1085 bp assembled on 2011-09-12
GenBank Submission: KX801836
> BS27556.complete
GAAGTTATCAGTCGACATGAGCACCCTGCGACCCGTCAGCGTTTGCGATA
CCACGCCGCTCCAGAGATTCGAGAGCCAGAGCAGCAGCGGTGAAGAGCCT
TCTTCGCCGACGGCTTCCAGTATTATAGCCGCCGCTTCAGGCCCCAATCA
CAACAACAACAACAATGTGAAACTTGACCTGCAGCTGCCCACCTTCGTTG
ATAGCACCCGTAGCCAGGGTTCACTGTACGCGGTAGCCAGCAACAAGAAG
CCACCGCTGCGTGGACCACGACAAATCTTCGGAAGGATCCTCACGGACCT
CTGTTTGCTCAGCTGCGTTGGTCTACCTATGCTGGGATTTTCGCTTTGGG
GCGAAGCGGTTAAGCGCGGATTCTTCTGCGATGATTCCTCCTTGAGGCAT
CCATATCGAGACTCCACCATGCCCAGTTGGATTCTCTACTTGATGTGTGG
CGCCTTGCCTCTTACTGTGATGCTTGTGGTGGAGTTCTTTAGAGGACAGG
ACAAGCGATTGCACAGTCCATTTCCGAAGAGCACGATGTGCAGTGGCTAT
CATCTGTGCCACTTGGAGCTGCCCACTTGGCTGGTGGAGTGCTACCACAG
GATGGGTATCTTTATCTTCGGATTGGGCGTAGAGCAGCTATCCACGAACA
TCGCCAAGTATTCCATTGGACGGCTGAGACCTCACTTCTACACACTCTGT
CAGCCCGTCATGAAAGATGGCACCACTTGCAGTGATCCCATTAACGCTGC
TCGTTACATCGAGGAGTTCACCTGTGCGGCGGTGGACATTACATCGAAGC
AGCTAAAGGACATGCGCCTGTCCTTTCCCAGTGGACATGCTAGCTTCGCC
TGCTACTCCATGCTCTACTTGGTGATTTACCTACATCGTAGAATGCAATG
GAAGCAGTTGAGAATGCTGTGCCACCTGCTTCAGTTCCTGCTGCTCATGT
TCGCCTGGTATACGGCTCTCACCAGAGTTTCCGACTACAAGCACCATTGG
TCCGATGTCTTGGCAGGATCTGGCATCGGACTGACCTACGCAGTCGTCGT
GACATCGACTATGTGGTAGAAGCTTTCTAGACCAT
BS27556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun2-RA | 1053 | CG8805-PA | 1..1053 | 17..1069 | 5250 | 99.9 | Plus |
| wun2-RB | 741 | CG8805-PB | 1..741 | 329..1069 | 3690 | 99.9 | Plus |
| wun-RC | 1095 | CG8804-PC | 890..995 | 915..1020 | 200 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun2-RA | 1968 | CG8805-RA | 720..1772 | 17..1069 | 5250 | 99.9 | Plus |
| wun2-RB | 2211 | CG8805-RB | 1263..2015 | 317..1069 | 3750 | 99.9 | Plus |
| wun2-RB | 2211 | CG8805-RB | 720..1020 | 17..317 | 1505 | 100 | Plus |
| wun-RC | 1563 | CG8804-RC | 1272..1377 | 915..1020 | 200 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9415061..9415361 | 17..317 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 9416857..9417082 | 469..694 | 1115 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9417156..9417335 | 695..874 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 9417394..9417571 | 874..1051 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 9416644..9416796 | 317..469 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 9402440..9402545 | 1020..915 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:22 has no hits.
BS27556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:16 Download gff for
BS27556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 718..1770 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:49 Download gff for
BS27556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 720..1772 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:52 Download gff for
BS27556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 720..1772 | 17..1069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:52 Download gff for
BS27556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9415061..9415361 | 17..317 | 100 | -> | Plus |
| 2R | 9416645..9416796 | 318..469 | 100 | -> | Plus |
| 2R | 9416858..9417082 | 470..694 | 99 | -> | Plus |
| 2R | 9417156..9417335 | 695..874 | 100 | -> | Plus |
| 2R | 9417395..9417571 | 875..1051 | 100 | -> | Plus |
| 2R | 9417633..9417650 | 1052..1069 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:49 Download gff for
BS27556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5305138..5305155 | 1052..1069 | 100 | | Plus |
| arm_2R | 5302566..5302866 | 17..317 | 100 | -> | Plus |
| arm_2R | 5304150..5304301 | 318..469 | 100 | -> | Plus |
| arm_2R | 5304363..5304587 | 470..694 | 99 | -> | Plus |
| arm_2R | 5304661..5304840 | 695..874 | 100 | -> | Plus |
| arm_2R | 5304900..5305076 | 875..1051 | 100 | -> | Plus |
BS27556.pep Sequence
Translation from 16 to 1068
> BS27556.pep
MSTLRPVSVCDTTPLQRFESQSSSGEEPSSPTASSIIAAASGPNHNNNNN
VKLDLQLPTFVDSTRSQGSLYAVASNKKPPLRGPRQIFGRILTDLCLLSC
VGLPMLGFSLWGEAVKRGFFCDDSSLRHPYRDSTMPSWILYLMCGALPLT
VMLVVEFFRGQDKRLHSPFPKSTMCSGYHLCHLELPTWLVECYHRMGIFI
FGLGVEQLSTNIAKYSIGRLRPHFYTLCQPVMKDGTTCSDPINAARYIEE
FTCAAVDITSKQLKDMRLSFPSGHASFACYSMLYLVIYLHRRMQWKQLRM
LCHLLQFLLLMFAWYTALTRVSDYKHHWSDVLAGSGIGLTYAVVVTSTMW
*
BS27556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun2-PA | 350 | CG8805-PA | 1..350 | 1..350 | 1876 | 100 | Plus |
| wun2-PB | 246 | CG8805-PB | 1..246 | 105..350 | 1343 | 100 | Plus |
| wun-PC | 364 | CG8804-PC | 13..343 | 8..346 | 799 | 45.7 | Plus |
| wun-PB | 379 | CG8804-PB | 13..344 | 8..347 | 799 | 45.6 | Plus |
| wun-PA | 300 | CG8804-PA | 5..265 | 85..347 | 755 | 52.9 | Plus |
