BS27558.complete Sequence
905 bp assembled on 2011-09-12
GenBank Submission: KX804903
> BS27558.complete
GAAGTTATCAGTCGACATGTCGACCAGCCCGAAACCGGTTAAGAAGGTGC
CGATTCACTTGCAGAGTGCCCAGAATCGCGTCTACATCAAGAATGGCGAG
ATCGTCAACCATGACAAGTCCTTCAAAGCGGACGTGTACATCGAAGATGG
AATTATCAAGTTTGTGGGTCCCTCCTCGGAAATAACGATACCTGGCGGAG
TGCGCACCATCGACGCCAGCGGACTGATGATCATTCCCGGAGGCATCGAT
CCCCACACCCACATGCAGTTGCCTTTCGGCGGAGCCGTGGCCGTCGACGA
TTTCTACCATGGAACCAAGGCCGCCGTGGCAGGTGGCACCACCATGATCA
TCGACTTCGTTCTGCCCAACAAACATGAGTCGATGATCGAGGCCTACGAC
AAGTGGCGCAGCTGGGCCGATCCTAAGGTATGCTGCGACTACGGATTGCA
TGTGGGCATCACCTGGTGGTCGAAGTCGGTGTCTGAGGAGATCGGCATTC
TGTGCAAAGAGCTTGGAGTGAACTCCTTCAAAACATTCATGGCCTACAAA
GGACTTTATCAGTTGAATGACTCAGACCTTCTGGATGTGTTCGAGCGTAT
CAGGCACCTAAATGGGGTTGCTATGGTCCACGCGGAGAATGGCGACATCA
TTGCAAAGAACACGCAGCGCCTTTTGGCCGAGGGCATCAATGGTCCGGAG
GGTCACGAGCTGTCGCGGCCCGAGGAGGTCGAGGCCGAGGCGGTGCACCG
CGCCTGCGTCCTGGCCCACCAGGTAAGACCACTCCCATGTCGCCAGACAG
TGGGGGATGGATGGGAAGAGGGAGGAAGGAGGAGGCGGAGTGTGTCCATG
CCGGTTGAGTGCCATTGTGCACTGTGCCGCGCACTGTAAAAGCTTTCTAG
ACCAT
BS27558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CRMP-RE | 1785 | CG1411-PE | 1..757 | 17..773 | 3785 | 100 | Plus |
| CRMP-RB | 999 | CG1411-PB | 1..757 | 17..773 | 3785 | 100 | Plus |
| CRMP-RA | 1770 | CG1411-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CRMP-RE | 2590 | CG1411-RE | 133..890 | 16..773 | 3790 | 100 | Plus |
| CRMP-RB | 2814 | CG1411-RB | 133..890 | 16..773 | 3790 | 100 | Plus |
| CRMP-RA | 2575 | CG1411-RA | 133..889 | 16..772 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5575778..5576042 | 625..889 | 1325 | 100 | Plus |
| 3R | 32079331 | 3R | 5574663..5574853 | 160..350 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 5575239..5575375 | 426..562 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 5574261..5574341 | 16..96 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 5574913..5574991 | 351..429 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 5574402..5574468 | 95..161 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 5575434..5575500 | 561..627 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:06 has no hits.
BS27558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:16 Download gff for
BS27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RC | 134..1004 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:14 Download gff for
BS27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RB | 134..894 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:09 Download gff for
BS27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RB | 134..894 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:09 Download gff for
BS27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5574262..5574340 | 17..95 | 100 | -> | Plus |
| 3R | 5574403..5574466 | 96..159 | 100 | -> | Plus |
| 3R | 5574663..5574853 | 160..350 | 100 | -> | Plus |
| 3R | 5574913..5574989 | 351..427 | 100 | -> | Plus |
| 3R | 5575241..5575375 | 428..562 | 100 | -> | Plus |
| 3R | 5575436..5575498 | 563..625 | 100 | -> | Plus |
| 3R | 5575779..5576040 | 626..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:14 Download gff for
BS27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1400963..1401097 | 428..562 | 100 | -> | Plus |
| arm_3R | 1401158..1401220 | 563..625 | 100 | -> | Plus |
| arm_3R | 1401501..1401762 | 626..887 | 100 | | Plus |
| arm_3R | 1399984..1400062 | 17..95 | 100 | -> | Plus |
| arm_3R | 1400125..1400188 | 96..159 | 100 | -> | Plus |
| arm_3R | 1400385..1400575 | 160..350 | 100 | -> | Plus |
| arm_3R | 1400635..1400711 | 351..427 | 100 | -> | Plus |
BS27558.pep Sequence
Translation from 16 to 888
> BS27558.pep
MSTSPKPVKKVPIHLQSAQNRVYIKNGEIVNHDKSFKADVYIEDGIIKFV
GPSSEITIPGGVRTIDASGLMIIPGGIDPHTHMQLPFGGAVAVDDFYHGT
KAAVAGGTTMIIDFVLPNKHESMIEAYDKWRSWADPKVCCDYGLHVGITW
WSKSVSEEIGILCKELGVNSFKTFMAYKGLYQLNDSDLLDVFERIRHLNG
VAMVHAENGDIIAKNTQRLLAEGINGPEGHELSRPEEVEAEAVHRACVLA
HQVRPLPCRQTVGDGWEEGGRRRRSVSMPVECHCALCRAL*
BS27558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CRMP-PA | 589 | CG1411-PA | 1..277 | 1..275 | 1341 | 94.2 | Plus |
| CRMP-PB | 332 | CG1411-PB | 1..252 | 1..252 | 1337 | 100 | Plus |
| CRMP-PE | 594 | CG1411-PE | 1..252 | 1..252 | 1337 | 100 | Plus |
