BS27559.complete Sequence
2042 bp assembled on 2011-10-14
GenBank Submission: KX805159
> BS27559.complete
GAAGTTATCAGTCGACATGCCGAGCTCACGACGTGCGATCCTGAGGCACA
TATTGTCGGGCATTTGCACCAAGATGAATCGCACCAAGTCGGTGCCCACT
GACGTCATGGAGACGCCGCTAAACCGATGCCTCAACACCTTCGACATCGC
TCTATTGGGCATTGGCCATATGGTTGGCGCTGGCATCTACGTGCTGACTG
GAACTGTGGCCAAGGAAATGGCCGGACCCGGGATCATATTATCCTTCATC
CTGGCCGGATTTATTTCGATGCTGGCCGCCCTATGTTACGCGGAGTTCGG
GACTCGAGTGCCCAAGGCGGGATCGGCCTATGTGTACACCTACATCTCGA
TGGGTGAATTCTGGGCCTTCGTCATCGGCTGGAATATCCTGCTGGAGCAT
ATGCTGGGTGCAGCTTCGGTGGCCAGGGCCTGGAGTGGATACGTGGATTC
AATGCTGGGCGGTTGGATTGGGAACACAACGCTGGAGCTAACGGGTGGCA
TCCACGAGCCCGGATTGGCCCAATACCCCGACGTCTTAGCCTTCCTGGTC
TGCATTGTTTACGCGGCTGCTCTGGCCGGAGGAGTAAAGGCCACGGCGGT
GTTTAACAGTCTCCTCACCCTGGTCAATATAGCCGTGATGGTGCTGGTCA
TCAGCGTGGGATTCTGGTATGCGGATGGTAAGAATTGGTCCGAGGCTGAG
GGTGGATTTCTGCCCTACGGCGTTGGAGGAGTCATCGCCGGTGCAGCCAC
CTGTTTCTACGCCTTCGTGGGCTTCGATTCCATAGCCACTTCCGGTGAGG
AGGCCAAAAACCCATCGGTATCCATACCCGTGGCCACTGTGATCTCATTG
TTCGTGGTGACAGTGGGCTACATCCTTGTCAGCGCCGCTCTGACCCTTAT
GATTCCCATCAGTGAGATCAATCCGGCTGCCTCATTGCCGGAGGCATTTG
GGCAATTGAACCTCTCCTGGGCCAAGTACCTTATCTCCATCGGAGCTCTG
TGTGGAATGACCACCACCCTGTTGGGATCCCTGTTCGCCCTGCCACGCTG
CATGTACGCCATGGCCTCGGATGGATTGCTCTTCAGCTGTTTTGGGAAGA
TTAACCCGACCACCCAGGTGCCACTGCTGAATCTAGTGGTATCCGGGGTA
ATGAGTGCCTGCCTCGCTTTGGTCTTCGATCTGGCCAAGCTGGTGGAGTT
TATGTCCATTGGCACTTTGTTGGCCTACACCATCGTCTCGGCCAGTGTGA
TCATCCTGCGATATCGTCCCATGGAGCGAATTCATACCACGATTAGGGTA
CCCGCAGTGGCTGGAAGTCCCGACGACGACGACGATGATGACGAGGATGT
GGCGTCCCAGTCCAGCATGGATACCTCCTCACCGACCAGTGAGATGATAG
AGGAAGTCTTAGCTGGAAGACTAAAGGCCCAGTTCAGGTGCTTGGAACCC
CTACTAGGACGTTTCGAACCGGGATCTGTGGTGTCCGTCGCCGTGATGCT
GTTCATCTTCCTGAGCTTTGCCATCTGTGTGGAGCTAAAGGTGTCGTGGA
CGCAACTCTATACGGGCACCTGGTGGGCACTGATCATCTATGGATTCATC
ATCTTCGCAGCAGGCACTTGCGTGGCCGTGATAGCTGTCCATAACCAGAA
CACCCGTGGCCTGATCTTCAAAGTTCCCCTGGTTCCCTTCGTTCCTGCAC
TTGGAATCTTTTGTAACATCTTGTTGATGGTCCATCTGGATGCCGTGACT
TGGGTAAGGTTCTTTGTCTGGGTTTGTATCGGTATGGTGGTGTACTTCCT
CTACGGGATTCGTAACAGCAAAGAGGGCGAGGTCTGCTCCTCGTACTCCA
TCCTTATGACCACTTCGGAGGCTGGAAAGGTGCCGTGGGGTTCCTTCAAG
GCAACTTCCGGTGGCAAGAAGTCCAGTAAGCACTCCATCTTCGAGAGATT
CACAGGACGCAGCAAGCCGGAGGACAAGAAATCAATTGTAGAGGAAAGCG
AAAACGAAACGTCCGGATATTCCTAAAAGCTTTCTAGACCAT
BS27559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13248-RA | 2010 | CG13248-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13248-RA | 2856 | CG13248-RA | 163..2172 | 17..2026 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20407787..20409655 | 2026..158 | 9345 | 100 | Minus |
| 3L | 28110227 | 3L | 20410262..20410404 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:59:19 has no hits.
BS27559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:51 Download gff for
BS27559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 166..2173 | 17..2024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:59 Download gff for
BS27559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 163..2170 | 17..2024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:29 Download gff for
BS27559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 163..2170 | 17..2024 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:29 Download gff for
BS27559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20407789..20409654 | 159..2024 | 100 | <- | Minus |
| 3L | 20410263..20410404 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:59 Download gff for
BS27559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20400889..20402754 | 159..2024 | 100 | <- | Minus |
| arm_3L | 20403363..20403504 | 17..158 | 100 | | Minus |
BS27559.pep Sequence
Translation from 16 to 2025
> BS27559.pep
MPSSRRAILRHILSGICTKMNRTKSVPTDVMETPLNRCLNTFDIALLGIG
HMVGAGIYVLTGTVAKEMAGPGIILSFILAGFISMLAALCYAEFGTRVPK
AGSAYVYTYISMGEFWAFVIGWNILLEHMLGAASVARAWSGYVDSMLGGW
IGNTTLELTGGIHEPGLAQYPDVLAFLVCIVYAAALAGGVKATAVFNSLL
TLVNIAVMVLVISVGFWYADGKNWSEAEGGFLPYGVGGVIAGAATCFYAF
VGFDSIATSGEEAKNPSVSIPVATVISLFVVTVGYILVSAALTLMIPISE
INPAASLPEAFGQLNLSWAKYLISIGALCGMTTTLLGSLFALPRCMYAMA
SDGLLFSCFGKINPTTQVPLLNLVVSGVMSACLALVFDLAKLVEFMSIGT
LLAYTIVSASVIILRYRPMERIHTTIRVPAVAGSPDDDDDDDEDVASQSS
MDTSSPTSEMIEEVLAGRLKAQFRCLEPLLGRFEPGSVVSVAVMLFIFLS
FAICVELKVSWTQLYTGTWWALIIYGFIIFAAGTCVAVIAVHNQNTRGLI
FKVPLVPFVPALGIFCNILLMVHLDAVTWVRFFVWVCIGMVVYFLYGIRN
SKEGEVCSSYSILMTTSEAGKVPWGSFKATSGGKKSSKHSIFERFTGRSK
PEDKKSIVEESENETSGYS*
BS27559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13248-PA | 669 | CG13248-PA | 1..669 | 1..669 | 3431 | 100 | Plus |
| slif-PB | 604 | CG11128-PB | 1..559 | 13..603 | 1090 | 39.6 | Plus |
| slif-PC | 604 | CG11128-PC | 1..559 | 13..603 | 1090 | 39.6 | Plus |
| CG7255-PI | 607 | CG7255-PI | 11..587 | 20..601 | 1089 | 39.2 | Plus |
| CG7255-PE | 607 | CG7255-PE | 11..587 | 20..601 | 1089 | 39.2 | Plus |
