BS27562.complete Sequence
1037 bp assembled on 2011-09-12
GenBank Submission: KX801296
> BS27562.complete
GAAGTTATCAGTCGACATGCGTGACTGGATGCCAGTGCTCTTCTGCGGAC
TGTCCGTGCCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCC
AAGTTCTGGAGCAGTGACTTTGAGGGTTATCCGACAGAGTCCCGGGTGAT
TCCGCCGGTGCGCTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGA
CTGTGGCTCTGCGCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGC
ATTCTGGTGGCCTTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAG
CTTGGTGGTGTTCTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGC
ACATGAAACGCCGTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGA
AACTGGATACAGGTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATT
GCTTTATCTGCTGGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCAC
GAGAATACCGATCCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCC
TGTTGCAATGGCGACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCA
ACGCGATCCAGTTTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCA
ATGGTGGGGTTTCGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTG
CTCGTCGGCTTTGGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAA
AATGCTTCTGATTAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCA
TCGCTGGACTTTTTGGGTCCCTTTTGGACTCTGTCCTAGGTGGTCTGCTG
CAGTTCTCGGGCATCAATGAGGAAGGCAAGATTGTGGATACACCTGGAAA
GGGAGTGCGCCACGTAAGCGGACTGCGCATCCTGGACAACCATAGTGTCA
ACCTGATTTCCAGCATCGTCACCGGCGTCACCATTCCTCTCCTGGCCCAG
AGATTCTGGCCCGTGCGCTAAAAGCTTTCTAGACCAT
BS27562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RB | 1005 | CG10171-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| CG10171-RA | 993 | CG10171-PA | 1..993 | 17..1021 | 4810 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RB | 1845 | CG10171-RB | 134..1138 | 17..1021 | 5025 | 100 | Plus |
| CG10171-RA | 1611 | CG10171-RA | 60..1052 | 17..1021 | 4810 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13386715..13387611 | 1021..125 | 4485 | 100 | Minus |
| 3L | 28110227 | 3L | 13387664..13387774 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:49:37 has no hits.
BS27562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:17 Download gff for
BS27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 96..1098 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:36 Download gff for
BS27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 134..1136 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:27 Download gff for
BS27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 134..1136 | 17..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:27 Download gff for
BS27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13387666..13387774 | 17..125 | 100 | | Minus |
| 3L | 13386717..13387610 | 126..1019 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:36 Download gff for
BS27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13380766..13380874 | 17..125 | 100 | | Minus |
| arm_3L | 13379817..13380710 | 126..1019 | 100 | <- | Minus |
BS27562.pep Sequence
Translation from 16 to 1020
> BS27562.pep
MRDWMPVLFCGLSVPISLFMWLGNVALSKFWSSDFEGYPTESRVIPPVRW
LFSTLAPLALMTVALRRRSVNRSGAALGILVAFILSIASHPFFASLVVFF
FSSSRATKFRAHMKRRFESDFREGEGQRNWIQVLCNGGMAAQLALLYLLD
CGSGERAVDFAREYRSSWLGVAVMSAFACCNGDTWSSELGSVLSQRDPVS
IITWRRVPRGTNGGVSLLGVAVSLLGGLLVGFGYFVTVRYTVEAKMLLIS
PPQWPIIAFGGIAGLFGSLLDSVLGGLLQFSGINEEGKIVDTPGKGVRHV
SGLRILDNHSVNLISSIVTGVTIPLLAQRFWPVR*
BS27562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-PB | 334 | CG10171-PB | 1..334 | 1..334 | 1726 | 100 | Plus |
| CG10171-PA | 330 | CG10171-PA | 1..330 | 1..334 | 1686 | 98.8 | Plus |
