BS27563.complete Sequence
1709 bp assembled on 2011-10-14
GenBank Submission: KX804199
> BS27563.complete
GAAGTTATCAGTCGACATGGCGCAGCGGCTTCATCTAGCGCTGGTCGGTG
TGGTGCTCCTAAACGCGACCGCCTCCTTCGCCTGGAAGCCCATCGTTGGC
GGCGGCAGCGGGATTAGCGGCGGCACTGCCGCCTACAGCCTCAAGCAATC
GCATCCAGGGGCGGCGAGCAGTAGCCATGAAATATCCACCAGCTTCTCGC
AGTTCGGCGGCGACAAGGAGACCACCGAAGTCGAGGACGAGCTCTTGCTG
GGTCGCGCTGCCATTGTGAACGGCGTCGATTCCAGTGCAGCGGTGTCCCA
TCCAATCAGCTTTGCTGACCACTTGGAGGACCAGTACGAGTCGTACAGCA
TCGAGGACGAGGCGCCCAAAGAGCCGCTGGCCTTCCCGCGGTCTCCAGTG
TACGGCTCCGATCGCTGCAGCGTCAAGAAGTTCGCCTTCAATCAGGACGG
CGAGGTGGAGTACGGCAATCCGATGCCGGAACTGGACCAGTTTACTATCT
GCTTTTGGATGCGATTCACTAACCACAGCGGCGACCACGTCCTCTTGACC
TACGAGGCTGGAAAGGAACCACGCGAGGTGCAAATCTGGGTCGCAAATGC
GCAGAATTCCAGTTTCCTTTCGATGGCCATAAAAGGTCAGCAAATGTACA
GATTGAACTACCCGTTGAAAATGCGCCAGTGGCATCACATGTGCAGCTCG
TGGAATGGCAAGACGGGCGAGTGGCAGGCCTGGCTGAAGGCAGAACGCAT
TGGGCGTGGTTTCCACAACTCGTTGGTGGGACATAAAATCCCAGCGAATG
GCAAGCTGCGCTCCGGCGGCAGTTCGGTCACCGGCGAGGTGAGCCACGGC
CTCCACTTCGAGATGACGCTCGTCCAGGTCTATCGGGTGGCGCTCAGTGC
AGGCAAGGCGCATCGCGACCACAAGCACCACCATGTCCACCACTTTGATC
ACGAGGGCCAGGAGGTCTCCAGCACCACTCGTGCCCCACCCTCGATTAAT
CGTCCTCAACCCATGCACACGCTGCTCGCCAGTGGCCAGATCCCGACCCG
GGTGCGCATCAACTTAGCCAATCCGCCGCCGACTGCAAGTGGTGCTCCCG
CTCCTGGCGCGGCCGGAGCTCCGACCGATTCCGCCCAGCAGGCCATCACC
ATCAACACAAATTTTGTGAACGGACAGATAAACGCGGGATCGCGACTGGT
GGCCCAGCAACTCCTTGGCCTCTCGCCGCCGAGCGGATTGCAGCCTAGTG
GCGGTGGCAAACGCTTCCAAATGCTAAGTAACTCAGCCAACGTGCAGTTC
ATCGACGAAACGGAGACCCACATCCAGTTCAAGAGGAACACCGACGCCAC
TAAGAAGGTTCAGAAGCGCGGCCTGGTGCTGCTGGACGATGGATCTGTGG
TGGACGACGGTGTCGGTTCCGGAACGGATGGGAGCTTGATTTACAACGGT
CTCGCCGACTTTGGCGGACAGCAATTTAAGCAGGATCTTACGCTCAAGAT
GAGCCTGGAGGAGGAGATCAGCACGCACGACCGAGAGCCCGCCGAGGAGG
AGGTAAGGGCCGTGATGGCCATCTGTAGCAGCTGCCACACGGAGCCTTTC
CAGGGTGCCATCGTGTTTTCGTGGAAGGATGTGCGCGAGCACATGAACAA
CGCCCTCAAGGGCCTCAGTGTGGGTCCATGTGGTAACTTCTAGAAGCTTT
CTAGACCAT
BS27563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b6-RA | 1677 | CG3100-PA | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b6-RA | 2139 | CG3100-RA | 150..1830 | 13..1693 | 8375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1689179..1689878 | 994..1693 | 3485 | 99.9 | Plus |
| X | 23542271 | X | 1686773..1687317 | 13..557 | 2710 | 99.8 | Plus |
| X | 23542271 | X | 1688901..1689123 | 772..994 | 1115 | 100 | Plus |
| X | 23542271 | X | 1688647..1688769 | 650..772 | 615 | 100 | Plus |
| X | 23542271 | X | 1688480..1688574 | 557..651 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:00:04 has no hits.
BS27563.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:52 Download gff for
BS27563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 152..1828 | 17..1693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:24 Download gff for
BS27563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 154..1830 | 17..1693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:49 Download gff for
BS27563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 154..1830 | 17..1693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:49 Download gff for
BS27563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1686777..1687317 | 17..557 | 100 | -> | Plus |
| X | 1688481..1688574 | 558..651 | 100 | -> | Plus |
| X | 1688649..1688769 | 652..772 | 100 | -> | Plus |
| X | 1688902..1689123 | 773..994 | 100 | -> | Plus |
| X | 1689180..1689878 | 995..1693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:24 Download gff for
BS27563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1582935..1583156 | 773..994 | 100 | -> | Plus |
| arm_X | 1580810..1581350 | 17..557 | 100 | -> | Plus |
| arm_X | 1582514..1582607 | 558..651 | 100 | -> | Plus |
| arm_X | 1582682..1582802 | 652..772 | 100 | -> | Plus |
| arm_X | 1583213..1583911 | 995..1693 | 99 | | Plus |
BS27563.pep Sequence
Translation from 16 to 1692
> BS27563.pep
MAQRLHLALVGVVLLNATASFAWKPIVGGGSGISGGTAAYSLKQSHPGAA
SSSHEISTSFSQFGGDKETTEVEDELLLGRAAIVNGVDSSAAVSHPISFA
DHLEDQYESYSIEDEAPKEPLAFPRSPVYGSDRCSVKKFAFNQDGEVEYG
NPMPELDQFTICFWMRFTNHSGDHVLLTYEAGKEPREVQIWVANAQNSSF
LSMAIKGQQMYRLNYPLKMRQWHHMCSSWNGKTGEWQAWLKAERIGRGFH
NSLVGHKIPANGKLRSGGSSVTGEVSHGLHFEMTLVQVYRVALSAGKAHR
DHKHHHVHHFDHEGQEVSSTTRAPPSINRPQPMHTLLASGQIPTRVRINL
ANPPPTASGAPAPGAAGAPTDSAQQAITINTNFVNGQINAGSRLVAQQLL
GLSPPSGLQPSGGGKRFQMLSNSANVQFIDETETHIQFKRNTDATKKVQK
RGLVLLDDGSVVDDGVGSGTDGSLIYNGLADFGGQQFKQDLTLKMSLEEE
ISTHDREPAEEEVRAVMAICSSCHTEPFQGAIVFSWKDVREHMNNALKGL
SVGPCGNF*
BS27563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b6-PA | 558 | CG3100-PA | 1..558 | 1..558 | 2942 | 100 | Plus |
