Clone BS27565 Report

Search the DGRC for BS27565

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRoe1-RA
Protein status:BS27565.pep: full length peptide match
Sequenced Size:674

Clone Sequence Records

BS27565.complete Sequence

674 bp assembled on 2011-09-12

GenBank Submission: KX802877

> BS27565.complete
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGCCTTACCACTGCAGATGT
TTGGCCGGCGACTCGTCCACCTGAGGTCATCGGTCACTTCTCAAAATATG
AGTGCCCTGCGTTTGTACAGCACAGAGAAACAGCCGGAAGAAGCGACAGA
GCAGAAGGCCACCGAATCGTCGCCAGAAGTTGAGAAACTCACCAAGGAAC
TGGCCGCCGCCAAGGAGCAGAATGCCGAGCTAATGGACAAATACAAGCGT
TCGCTAGCCGACAGCGAAAACATGAGGAACCGACTGAACAAACAGATCAG
CGACGCCAAGATCTTTGGCATCCAGAGCTTCTGCAAGGATCTGCTCGAGG
TGGCGGACACACTGGGACATGCCACACAGGCGGTGCCCAAGGATAAGCTC
AGCGGCAATGCTGATTTGAAGAACCTGTACGAGGGCCTCACCATGACGCG
CGCCTCGCTGCTGCAGGTGTTCAAGCGACACGGACTGGAGCCACTGGATC
CCATCAACCAGAAGTTCGACCCCAATCAGCACGAGGCGCTGTTCCAGAAG
GAGGACAAGACCGTCGAGCCCAACACCGTGGTGGAGGTGACCAAGCTGGG
CTACAAACTGCACGAGCGTTGCATACGTCCGGCCTTGGTGGGCGTGTCGA
AGTGTTGAAAGCTTTCTAGACCAT

BS27565.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Roe1-RA 642 CG6155-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Roe1-RA 1065 CG6155-RA 105..750 17..662 3215 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13554385..13554681 101..397 1485 100 Plus
2R 25286936 2R 13555025..13555291 396..662 1320 99.6 Plus
2R 25286936 2R 13554181..13554266 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:49:58 has no hits.

BS27565.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:18 Download gff for BS27565.complete
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 100..740 17..657 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:46 Download gff for BS27565.complete
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 105..745 17..657 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:35 Download gff for BS27565.complete
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 105..745 17..657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:35 Download gff for BS27565.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13554181..13554266 17..102 100 -> Plus
2R 13554387..13554681 103..397 100 -> Plus
2R 13555027..13555286 398..657 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:46 Download gff for BS27565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9441686..9441771 17..102 100 -> Plus
arm_2R 9441892..9442186 103..397 100 -> Plus
arm_2R 9442532..9442791 398..657 100   Plus

BS27565.pep Sequence

Translation from 16 to 657

> BS27565.pep
MSAKAALPLQMFGRRLVHLRSSVTSQNMSALRLYSTEKQPEEATEQKATE
SSPEVEKLTKELAAAKEQNAELMDKYKRSLADSENMRNRLNKQISDAKIF
GIQSFCKDLLEVADTLGHATQAVPKDKLSGNADLKNLYEGLTMTRASLLQ
VFKRHGLEPLDPINQKFDPNQHEALFQKEDKTVEPNTVVEVTKLGYKLHE
RCIRPALVGVSKC*

BS27565.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Roe1-PA 213 CG6155-PA 1..213 1..213 1075 100 Plus