BS27565.complete Sequence
674 bp assembled on 2011-09-12
GenBank Submission: KX802877
> BS27565.complete
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGCCTTACCACTGCAGATGT
TTGGCCGGCGACTCGTCCACCTGAGGTCATCGGTCACTTCTCAAAATATG
AGTGCCCTGCGTTTGTACAGCACAGAGAAACAGCCGGAAGAAGCGACAGA
GCAGAAGGCCACCGAATCGTCGCCAGAAGTTGAGAAACTCACCAAGGAAC
TGGCCGCCGCCAAGGAGCAGAATGCCGAGCTAATGGACAAATACAAGCGT
TCGCTAGCCGACAGCGAAAACATGAGGAACCGACTGAACAAACAGATCAG
CGACGCCAAGATCTTTGGCATCCAGAGCTTCTGCAAGGATCTGCTCGAGG
TGGCGGACACACTGGGACATGCCACACAGGCGGTGCCCAAGGATAAGCTC
AGCGGCAATGCTGATTTGAAGAACCTGTACGAGGGCCTCACCATGACGCG
CGCCTCGCTGCTGCAGGTGTTCAAGCGACACGGACTGGAGCCACTGGATC
CCATCAACCAGAAGTTCGACCCCAATCAGCACGAGGCGCTGTTCCAGAAG
GAGGACAAGACCGTCGAGCCCAACACCGTGGTGGAGGTGACCAAGCTGGG
CTACAAACTGCACGAGCGTTGCATACGTCCGGCCTTGGTGGGCGTGTCGA
AGTGTTGAAAGCTTTCTAGACCAT
BS27565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roe1-RA | 642 | CG6155-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roe1-RA | 1065 | CG6155-RA | 105..750 | 17..662 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13554385..13554681 | 101..397 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 13555025..13555291 | 396..662 | 1320 | 99.6 | Plus |
2R | 25286936 | 2R | 13554181..13554266 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:58 has no hits.
BS27565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:18 Download gff for
BS27565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 100..740 | 17..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:46 Download gff for
BS27565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 105..745 | 17..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:35 Download gff for
BS27565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 105..745 | 17..657 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:35 Download gff for
BS27565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13554181..13554266 | 17..102 | 100 | -> | Plus |
2R | 13554387..13554681 | 103..397 | 100 | -> | Plus |
2R | 13555027..13555286 | 398..657 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:46 Download gff for
BS27565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9441686..9441771 | 17..102 | 100 | -> | Plus |
arm_2R | 9441892..9442186 | 103..397 | 100 | -> | Plus |
arm_2R | 9442532..9442791 | 398..657 | 100 | | Plus |
BS27565.pep Sequence
Translation from 16 to 657
> BS27565.pep
MSAKAALPLQMFGRRLVHLRSSVTSQNMSALRLYSTEKQPEEATEQKATE
SSPEVEKLTKELAAAKEQNAELMDKYKRSLADSENMRNRLNKQISDAKIF
GIQSFCKDLLEVADTLGHATQAVPKDKLSGNADLKNLYEGLTMTRASLLQ
VFKRHGLEPLDPINQKFDPNQHEALFQKEDKTVEPNTVVEVTKLGYKLHE
RCIRPALVGVSKC*
BS27565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roe1-PA | 213 | CG6155-PA | 1..213 | 1..213 | 1075 | 100 | Plus |