BS27568.complete Sequence
1787 bp assembled on 2011-10-14
GenBank Submission: KX804910
> BS27568.complete
GAAGTTATCAGTCGACATGGAATCTGTGAATAAATGCGGTAAAAGCGCAT
CCACAAGAAATTGTACGGTGAAAATGAGCCGGAAAATGTGGGTGCTTTCG
CTGCTGGCGCTGGCAGCGCTACAACTGCACTCGGGCAGCGAAGTGGCTGC
ACATTTGAATGTTTTCCTAAATCCCGTGGAAGTAATGCGTTTATTAGGCG
TCTCTGCTGAGGTTTACTACGTTCGCGAAGGTCATATAAATAACTACGCT
TTGAACTTCATTGTACCAGTTCCGGCGAATGTCAAGGACATTAGTTTCAC
CTGGCAGTCGCTGGCGGGGCGTGGCCTTCCCTACAGCATCAATGTGGTCA
GCTCCGATCAGGAAGTGCTTCCTCGACCGGCGATCAATGTGTCACACAGT
GGGGAAATCCCCACGACCATACAAACCTGGTCCATTGCCCTCAAGTGCAG
CGGATTGAAAGCGGCGGAGGTGGATGTGACTGTCAGCCTGGAAGTGGTGC
TCAACCGGTCACTGAACAATGTAACTCATCTGGTGTTTCGGAGGAAGAAG
ATCTGTCTTATGAATGACAGTGCCGAGGATTTGTCGGAGGATGTGGACGA
TCCCCAGTTGCTGGAGACCGTAATGTTACCACCCACTGGATTGATCACCC
TGGTCGTTGGTGTTTCTGTGGCCATGGGATCTGTGTGCCTGCTCCTCATG
ATTGCCTATTGCGTCAAGGGAGCAGCCAACAAGAGGCAGCATCATCAACA
CGGAGGACAGCCCATGAGGACTTCGAGCTTTCAGAGACTAAATACCCATC
CGCCCTGCCAGTCTTCCATGGGATCGGCTGCTTATATGACGCCTTCGATT
ATAGCTCCAATTCATGGCTCCTCCTTGCCACGGAAAGTTCCAGTTTCCGT
AGAGCAGCAACATCCGGAGGAGCTTCATCGCCGAATTTCCGAGTTGACCG
TGGAGCGCTGCAGGGTACGACTATCGAGTCTCCTGCAGGAAGGAACGTTT
GGACGAGTTTATCGTGGCACCTACAACGACACTCAGGATGTTCTGGTCAA
AACGGTGGCCCAGCATGCTAGCCAAATGCAGGTGCTTCTCCTTCTCCAGG
AAGGAATGCTGCTCTATGGCGCCTCTCACCCTGGAATTCTCTCGGTTCTC
GGCGTTTCCATTGAGGATCACACCACACCGTTTGTCCTCTATCCCGCTCT
GAACAATACCCGCAACTTAAAGCAATTCCTGCTGGATCCAGCTTGTGCTC
GCACTGTGACCACCATCCAAATTGTGATGATGGCCTCGCAACTGTCCATG
GCATTGGATCATCTGCACAGCCATGGAGTGGTGCATAAGGATATTGCCAC
AAGGAACTGCGTTATTGACGATCAGCTGAGGGTGAAGCTCTCCGATAGCT
CCCTGTCCCGCGATCTCTTCCCCTCGGACTACAACTGCCTGGGGGACAGC
GAAAACAGGCCAGTTAAGTGGATGTCCCTGGAGGCACTGCAGCACAAACA
GTTCTCCGAGGCCAGCGATTCGTGGGCCTTCGGAGTTCTGATGTGGGAGT
TGTGCACCTCCGCTAAGCAACCCTACGCCGAGGTGGATCCTTTCGAGATG
GAGCACTATCTCAAGGACGGGTATCGTCTGGCCCAGCCCTTCAACTGCCC
CGATGAGCTGTTTACGATCATGGCCTATTGTTGGGCCCTGTTACCTGCCG
AGCGGCCGACCTTCGCCCAGCTGCAGTCTTGTCTCTCCGAATTCTATTCA
CAAATCACGCGCTATGTCTAGAAGCTTTCTAGACCAT
BS27568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnt-RB | 1755 | CG17559-PB | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| dnt-RA | 1755 | CG17559-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| drl-RB | 1938 | CG17348-PB | 1048..1749 | 986..1687 | 675 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnt-RB | 2639 | CG17559-RB | 389..2143 | 17..1771 | 8775 | 100 | Plus |
| dnt-RA | 2630 | CG17559-RA | 389..2143 | 17..1771 | 8775 | 100 | Plus |
| drl-RB | 3104 | CG17348-RB | 1435..2136 | 986..1687 | 675 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19339770..19340936 | 1362..196 | 5835 | 100 | Minus |
| 2L | 23513712 | 2L | 19339353..19339651 | 1661..1363 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 19362658..19362839 | 198..17 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 19339165..19339276 | 1771..1660 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 19207205..19207503 | 1363..1661 | 400 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:35:02 has no hits.
BS27568.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:53 Download gff for
BS27568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnt-RA | 386..2140 | 17..1771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:52 Download gff for
BS27568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnt-RA | 389..2143 | 17..1771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:06 Download gff for
BS27568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnt-RA | 389..2143 | 17..1771 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:06 Download gff for
BS27568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19339355..19339651 | 1363..1659 | 100 | <- | Minus |
| 2L | 19362659..19362839 | 17..197 | 100 | | Minus |
| 2L | 19339165..19339276 | 1660..1771 | 100 | <- | Minus |
| 2L | 19339770..19340934 | 198..1362 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:52 Download gff for
BS27568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19339165..19339276 | 1660..1771 | 100 | <- | Minus |
| arm_2L | 19339355..19339651 | 1363..1659 | 100 | <- | Minus |
| arm_2L | 19339770..19340934 | 198..1362 | 100 | <- | Minus |
| arm_2L | 19362659..19362839 | 17..197 | 100 | | Minus |
BS27568.pep Sequence
Translation from 16 to 1770
> BS27568.pep
MESVNKCGKSASTRNCTVKMSRKMWVLSLLALAALQLHSGSEVAAHLNVF
LNPVEVMRLLGVSAEVYYVREGHINNYALNFIVPVPANVKDISFTWQSLA
GRGLPYSINVVSSDQEVLPRPAINVSHSGEIPTTIQTWSIALKCSGLKAA
EVDVTVSLEVVLNRSLNNVTHLVFRRKKICLMNDSAEDLSEDVDDPQLLE
TVMLPPTGLITLVVGVSVAMGSVCLLLMIAYCVKGAANKRQHHQHGGQPM
RTSSFQRLNTHPPCQSSMGSAAYMTPSIIAPIHGSSLPRKVPVSVEQQHP
EELHRRISELTVERCRVRLSSLLQEGTFGRVYRGTYNDTQDVLVKTVAQH
ASQMQVLLLLQEGMLLYGASHPGILSVLGVSIEDHTTPFVLYPALNNTRN
LKQFLLDPACARTVTTIQIVMMASQLSMALDHLHSHGVVHKDIATRNCVI
DDQLRVKLSDSSLSRDLFPSDYNCLGDSENRPVKWMSLEALQHKQFSEAS
DSWAFGVLMWELCTSAKQPYAEVDPFEMEHYLKDGYRLAQPFNCPDELFT
IMAYCWALLPAERPTFAQLQSCLSEFYSQITRYV*
BS27568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnt-PB | 584 | CG17559-PB | 1..584 | 1..584 | 3025 | 100 | Plus |
| dnt-PA | 584 | CG17559-PA | 1..584 | 1..584 | 3025 | 100 | Plus |
| drl-PA | 610 | CG17348-PA | 229..610 | 195..584 | 1336 | 65.1 | Plus |
| drl-PB | 645 | CG17348-PB | 229..610 | 195..584 | 1336 | 65.1 | Plus |
| Drl-2-PC | 648 | CG3915-PC | 362..648 | 299..584 | 639 | 45.8 | Plus |
| drl-PA | 610 | CG17348-PA | 20..177 | 45..201 | 513 | 62.3 | Plus |
| drl-PB | 645 | CG17348-PB | 20..177 | 45..201 | 513 | 62.3 | Plus |
