BS27569.complete Sequence
2810 bp assembled on 2011-10-14
GenBank Submission: KX803637
> BS27569.complete
GAAGTTATCAGTCGACATGGCTCAACCATCGCAATCGGGAGCCGCGCAGG
CGCTCAACGGCCAGCATCCGGAGTTGGCCTTCGCGGATGCGGACACGGAC
GGAGATGAGCGACTGGAGGAGCATGGGCAGGAGCAGGAGCAGCTCCAGCT
ACTGGGTGCCATGCCCAGGAAGCAATCTCTCAGCGAGCGACGCAATGTGG
ATCTACCGCATTTGAAGATGGTCAACGAAAAGGAGCCGGAGTCGGCGACG
CCGTCGCCGGAGGCCTTTGCACCGGGACTCCGACGCAATTCGATATCCAT
GCCCTCGGGCATTAATGCCCTGGATCTGGAGGCACTGCGTCTGCGACATC
AGATGCAGCCGCAAGATGCGCTGCACGAGGAGATTATAGCCGACGATGCG
ACCTCCAGCCTGGGCACACCGGCCACTCCGGATACGCCGGGCACTACGGC
GCCGACGACAACGGCCAATACGCCGGATAAGGCCATCAATTTCGCCAACG
ATGACAGCGATGACGAGTTCGGGAACGCCAGAAGACCAGTTCATCGAGAT
CGTTTTCGGAGCCGGAGACGCGCATCGATTGCTCCTCTGCCCGCCCTGCG
CTTGAACAGCAAGGAGATGTTGGCCAGCGACTTCGATAGCCACAGCCTGG
CCTCCAACCAGGCCTCCATCACCAGTGTCAACTCCCTGGCCAGTTTATTG
CGCGAGAAGATGCAGGCTTTTCCGCAGCTGATAAGAAAGAAGAAGCGCGA
GACGAAGGACTACAAAATCAAGATATTCGTCATCATCATGTTTTTCATCA
TCATATTTCTGATCGGCTATGCCTATGTGGCCTACCACCAGCAGGTGCTC
ACGCGTAGCTACTTCCAGAAGATCAAGTTCAATTCGCACGACCGCATCTT
TCGCATCCTGAGTCACGAGGACAAGGAGGTGATATCGGGTCAATTGGGCG
TGACCCTGGGCTTCGATACGGCGCCATTCCATTGCCTGGAGGAGCAGCGA
CGAAGTGACGGCAGCGTGTGCATCGAATGGAACGGAGTGGCGCGACTGCA
TCTGAACTTCGAGGACAAGGGCGTCTTTCGGTGCTACACGCTGCAGTGGC
AGGCACTGACGCCGGGTCTCCTGCCCACCGATTGTTATGAACTGAAGCGT
GACAATGGCCTGTGGTTCGGCGGCGGTGTGACCAAGGGTCAGGAGTGGTC
CCTCAGCTATGCCAACTTTGATTTTGCGCCCTATGCCTCCGGCGACTCGA
AGATCCATCAGTTCGGCAATGGGGTGAAGAGGTATTTCATCAACTCGATC
GGCGTGGCCATGCAGGTGAGCGAGAAGACGCCACTGCAGCTGGGCGTCAA
TCGGACGGAGAATCGCTTCTGCCTGCGGGCGGCCAACGATGAGTTCACCT
TTGTGAATCATCTGACGCCGCTGCCGCAGTTGGACTACCGCATCTGCACC
ACGGAGGACATGCGCAGCCTGCACATGCTGATGACCCAGCAGAGCCTGTG
GGATGGCCTCAAGGAGCAGGAGTTCAAGGTGCTGCACTCGCTGCTGGAGG
AGCCAGTTTGGAGGATACCGCACACCGAGCTGCCCGAGTCCCTCAACGAA
TCCGCCATCTGTGACTATTCGGAAAGTGCCATTGCCATGGGCCTGGGCCA
CATTGTCATCAATGAGTTCTGGCAGGAGAATATTGGCGACTTTACGGTGG
ACAAGGCCAGGTTTCCCACCCTCAAGGACACCATCGATGTGCTGCACAGG
CGGGGATTCAAGGTGGTCCTGACCATCCAACCGTTCATCAGCACGGACAG
TGCCAACTTCAAGGATGCAGTGAAACGCAAGCTGCTGATCTACGAACGCC
ACTCGGAGCGGAGTATTCCCGCCCTGACCAGGTACAAGAGTAGCTCCAGC
GCCGGCGTTCTGGACATAACCAACAATGCGTCCGTTCCCTGGCTGTTGGA
GAAGTTGCAGCGCCTGAAGGAGGAGTACGGAGTGCAGAGCTTCTACCTGG
ACCTGGGAACGGGCTACAATCTGCCGCACTACTATCAGTGCCGCCAGACC
TTGGATAATCCGGACACCTATGCCAGGCTGTTCACCGCCAGCCTGGAGGG
TGCTGGCCTGATGGCCGTCTCCACGGCGAGTGTGGTGCCCAAGCCACCCA
CTTTCCTGAGCACCCCGCCGGCGAACGCCACCTGGGAGGGATTGAGGGAG
ACTCTGGGCGCTGTGCTCAACTATGGCGTCATCGGCTATCCGTTCGTCCT
GCCGGGCGTGATCGGTGGCGACTATCTGCTGCAGCGACCGCTCTCCAAGA
TGGTCAGCTTCTATTCGCTGTCCCAGCCACCGTTGCCCGATCCGGAACTC
TTCATCCGTTGGCTCCAGCTGGCCACCTTTATGCCGGCCATGCAGTTTAG
CCATCTGCCGTCGGAGTATCGCAGTGATCTGGTCACCCGGGTGGCTCAGG
AGTTGAAGGAGGTGCGCCAGCTGATCGTGATTCCGCTGCTCAAGAAGTAC
CTCAATCCGTCGATGAACGAGGGACTGCCGCTGGTGAGACCGCTCTGGAT
GATGGATCCTCACGATCCCGCCTGTCTCATTGTCAGCGATGAGTTCTCCG
TGGGCGAGGAGCTAATCGTGGCGCCCATTCTGCATGCGAATCGCGAGGAG
CGCGAGGTTTACCTGCCGCAGGGCGTGTGGAAGGACGGTATCGATGGATC
GCTGAGGAAGGGCAGTCGCTGGATGCACGGCTATCGGGTGCCGAAGGACA
AGATTGCCTACTTCCGCAAGATGCCGGACAATACGCGGTTCTAGAAGCTT
TCTAGACCAT
BS27569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33080-RA | 2778 | CG33080-PA | 1..2778 | 17..2794 | 13890 | 100 | Plus |
| CG33080-RC | 2535 | CG33080-PC | 127..2535 | 386..2794 | 12045 | 100 | Plus |
| CG33080-RD | 2178 | CG33080-PD | 1..2178 | 617..2794 | 10890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33080-RA | 3190 | CG33080-RA | 65..2846 | 17..2798 | 13895 | 100 | Plus |
| CG33080-RC | 3084 | CG33080-RC | 328..2740 | 386..2798 | 12050 | 100 | Plus |
| CG33080-RD | 2762 | CG33080-RD | 167..2418 | 547..2798 | 11245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5709128..5710974 | 2657..811 | 9235 | 100 | Minus |
| X | 23542271 | X | 5717346..5717714 | 385..17 | 1845 | 100 | Minus |
| X | 23542271 | X | 5711634..5711804 | 716..546 | 855 | 100 | Minus |
| X | 23542271 | X | 5714652..5714812 | 546..386 | 805 | 100 | Minus |
| X | 23542271 | X | 5708903..5709044 | 2798..2657 | 695 | 99.3 | Minus |
| X | 23542271 | X | 5711477..5711575 | 811..713 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:35:42 has no hits.
BS27569.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:54 Download gff for
BS27569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 65..2842 | 17..2794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:07 Download gff for
BS27569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 65..2842 | 17..2794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:22 Download gff for
BS27569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 65..2842 | 17..2794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:22 Download gff for
BS27569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5708907..5709043 | 2658..2794 | 100 | <- | Minus |
| X | 5709128..5710973 | 812..2657 | 100 | <- | Minus |
| X | 5711477..5711572 | 716..811 | 100 | <- | Minus |
| X | 5711635..5711803 | 547..715 | 100 | <- | Minus |
| X | 5714652..5714812 | 386..546 | 100 | <- | Minus |
| X | 5717346..5717714 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:07 Download gff for
BS27569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5605510..5605605 | 716..811 | 100 | <- | Minus |
| arm_X | 5608685..5608845 | 386..546 | 100 | <- | Minus |
| arm_X | 5605668..5605836 | 547..715 | 100 | <- | Minus |
| arm_X | 5611379..5611747 | 17..385 | 100 | | Minus |
| arm_X | 5602940..5603076 | 2658..2794 | 100 | <- | Minus |
| arm_X | 5603161..5605006 | 812..2657 | 100 | <- | Minus |
BS27569.pep Sequence
Translation from 16 to 2793
> BS27569.pep
MAQPSQSGAAQALNGQHPELAFADADTDGDERLEEHGQEQEQLQLLGAMP
RKQSLSERRNVDLPHLKMVNEKEPESATPSPEAFAPGLRRNSISMPSGIN
ALDLEALRLRHQMQPQDALHEEIIADDATSSLGTPATPDTPGTTAPTTTA
NTPDKAINFANDDSDDEFGNARRPVHRDRFRSRRRASIAPLPALRLNSKE
MLASDFDSHSLASNQASITSVNSLASLLREKMQAFPQLIRKKKRETKDYK
IKIFVIIMFFIIIFLIGYAYVAYHQQVLTRSYFQKIKFNSHDRIFRILSH
EDKEVISGQLGVTLGFDTAPFHCLEEQRRSDGSVCIEWNGVARLHLNFED
KGVFRCYTLQWQALTPGLLPTDCYELKRDNGLWFGGGVTKGQEWSLSYAN
FDFAPYASGDSKIHQFGNGVKRYFINSIGVAMQVSEKTPLQLGVNRTENR
FCLRAANDEFTFVNHLTPLPQLDYRICTTEDMRSLHMLMTQQSLWDGLKE
QEFKVLHSLLEEPVWRIPHTELPESLNESAICDYSESAIAMGLGHIVINE
FWQENIGDFTVDKARFPTLKDTIDVLHRRGFKVVLTIQPFISTDSANFKD
AVKRKLLIYERHSERSIPALTRYKSSSSAGVLDITNNASVPWLLEKLQRL
KEEYGVQSFYLDLGTGYNLPHYYQCRQTLDNPDTYARLFTASLEGAGLMA
VSTASVVPKPPTFLSTPPANATWEGLRETLGAVLNYGVIGYPFVLPGVIG
GDYLLQRPLSKMVSFYSLSQPPLPDPELFIRWLQLATFMPAMQFSHLPSE
YRSDLVTRVAQELKEVRQLIVIPLLKKYLNPSMNEGLPLVRPLWMMDPHD
PACLIVSDEFSVGEELIVAPILHANREEREVYLPQGVWKDGIDGSLRKGS
RWMHGYRVPKDKIAYFRKMPDNTRF*
BS27569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33080-PA | 925 | CG33080-PA | 1..925 | 1..925 | 4847 | 100 | Plus |
| CG33080-PC | 844 | CG33080-PC | 22..844 | 85..925 | 4227 | 96.3 | Plus |
| CG33080-PD | 725 | CG33080-PD | 1..725 | 201..925 | 3820 | 100 | Plus |
| CG33080-PB | 725 | CG33080-PB | 1..725 | 201..925 | 3820 | 100 | Plus |
| tobi-PA | 657 | CG11909-PA | 118..652 | 367..919 | 530 | 27 | Plus |
